☆21Dec 20, 2025Updated 9 months ago
Alternatives and similar repositories for SPACE
Users that are interested in SPACE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆28Jun 5, 2025Updated last year
- ☆15Mar 20, 2023Updated 3 years ago
- TACO: TFBS-Aware Cis-Regulatory Element Optimization☆23Aug 1, 2025Updated last year
- [ICML2025] The official implementation of "WGFormer: An SE(3)-Transformer Driven by Wasserstein Gradient Flows for Molecular Ground-State…☆31Mar 18, 2026Updated 6 months ago
- [ICML2025] The official implementation of "PolyConf: Unlocking Polymer Conformation Generation through Hierarchical Generative Models"☆37Mar 18, 2026Updated 6 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆99Jun 10, 2026Updated 4 months ago
- The PyTorch implementation of MoMu, described in "Natural Language-informed Modeling of Molecule Graphs".☆29Jul 17, 2023Updated 3 years ago
- A framework to score and analyze variant effects genome-wide using ChromBPNet models☆21Mar 2, 2026Updated 7 months ago
- [CIKM2023] The official implementation of "MPerformer: An SE(3) Transformer-based Molecular Perceptron"☆27Nov 12, 2024Updated last year
- Machine learning methods for DNA sequence analysis.☆66Sep 30, 2026Updated 2 weeks ago
- The official implementation of “ReGuLaR: Variational Latent Reasoning Guided by Rendered Chain-of-Thought”☆54Feb 2, 2026Updated 8 months ago
- Code repository for the manuscript: Nucleotide dependency analysis of DNA language models reveals genomic functional elements☆30Aug 3, 2026Updated 2 months ago
- Code used in article "Uncovering the transcriptional regulatory network involved in boosting wheat regeneration and transformation".☆13Mar 21, 2023Updated 3 years ago
- ☆10Mar 13, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆14Nov 29, 2022Updated 3 years ago
- ☆14Jun 13, 2024Updated 2 years ago
- Pipeline for the analysis of PE ChIP-seq data☆15Jul 20, 2020Updated 6 years ago
- DrugBank dataset files in R dataframes☆17Jan 19, 2025Updated last year
- [ICML 2025] Code for SUICA: Learning Super-high Dimensional Sparse Implicit Neural Representations for Spatial Transcriptomics.☆21Nov 22, 2025Updated 10 months ago
- Implementation of AlphaGenome, Deepmind's updated genomic attention model☆101Mar 25, 2026Updated 6 months ago
- The repository of paper Personalized Multimodal Response Generation with Large Language Models☆18Jun 28, 2024Updated 2 years ago
- code to run sei and obtain sei and sequence class predictions☆118Dec 20, 2022Updated 3 years ago
- conserved non-coding sequence☆18Feb 21, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆13Apr 23, 2025Updated last year
- PDLLMs: A group of tailored DNA large language models (LLMs) for analyzing plant genomes☆58Sep 5, 2026Updated last month
- ☆15Oct 15, 2024Updated 2 years ago
- ENNGene: an Easy Neural Network model building tool for Genomics☆11Mar 31, 2022Updated 4 years ago
- [UAI 2023] Improvable Gap Balancing for Multi-Task Learning☆16May 29, 2023Updated 3 years ago
- [CVPR 2024] Dynamic Prompt Optimizing for Text-to-Image Generation☆87Jul 13, 2024Updated 2 years ago
- SNE Simulation Dataset Functions☆12Oct 2, 2026Updated last week
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆41Mar 27, 2025Updated last year
- PathPiece tokenizer☆14Nov 10, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆10Jul 10, 2023Updated 3 years ago
- Equivariant layers for RC-complement symmetry in DNA sequence data☆13Feb 24, 2022Updated 4 years ago
- Multi-view hierarchical clustering in R☆12Apr 24, 2024Updated 2 years ago
- Data Portfolio☆11Jul 18, 2018Updated 8 years ago
- Jax code for functional genomics ML☆14Mar 5, 2025Updated last year
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆131Dec 10, 2025Updated 10 months ago
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆18Dec 19, 2023Updated 2 years ago