ZhuJiwei111 / SPACELinks
☆18Updated last month
Alternatives and similar repositories for SPACE
Users that are interested in SPACE are comparing it to the libraries listed below
Sorting:
- TACO: TFBS-Aware Cis-Regulatory Element Optimization☆18Updated last month
- ☆51Updated 2 weeks ago
- InstructMol: Multi-Modal Integration for Building a Versatile and Reliable Molecular Assistant in Drug Discovery (COLING 2025)☆50Updated 9 months ago
- Implementation of AlphaGenome, Deepmind's updated genomic attention model☆65Updated 3 weeks ago
- [NeurIPS 2024] BEACON: Benchmark for Comprehensive RNA Tasks and Language Models☆50Updated last year
- [COLM'24] We propose Protein Chain of Thought (ProCoT), which replicates the biological mechanism of signaling pathways as language promp…☆67Updated 5 months ago
- ☆20Updated 5 months ago
- [ACL 2024] ProtLLM: An Interleaved Protein-Language LLM with Protein-as-Word Pre-Training☆49Updated last year
- ☆48Updated last year
- BioT5 (EMNLP 2023) and BioT5+ (ACL 2024 Findings)☆118Updated 11 months ago
- The official code for "TaxDiff: Taxonomic-Guided Diffusion Model for Protein Sequence Generation"☆69Updated last year
- Official Code for Paper "Think While You Generate: Discrete Diffusion with Planned Denoising" [ICLR 2025]☆74Updated 4 months ago
- Code for the paper DisCo-Diff: Enhancing Continuous Diffusion Models with Discrete Latents, ICML 2024☆86Updated last year
- [ICML2025] The official implementation of "WGFormer: An SE(3)-Transformer Driven by Wasserstein Gradient Flows for Molecular Ground-State…☆17Updated 2 months ago
- [ICLR 2024] Mol-Instructions: A Large-Scale Biomolecular Instruction Dataset for Large Language Models☆283Updated 10 months ago
- [AAAI 2025] CoPRA: Bridging Cross-domain Pretrained Sequence Models with Complex Structures for Protein-RNA Binding Affinity Prediction☆31Updated 8 months ago
- ☆69Updated this week
- [ICML 2024] VQDNA: Unleashing the Power of Vector Quantization for Multi-Species Genomic Sequence Modeling☆10Updated 11 months ago
- A Protein Large Language Model for Multi-Task Protein Language Processing☆191Updated 3 months ago
- PRESTO: Progressive Pretraining Enhances Synthetic Chemistry Outcomes [EMNLP 2024]☆28Updated 9 months ago
- Must-read papers on AI for Biology☆19Updated last year
- Code and Data for the paper: Multi-level Protein Structure Pre-training with Prompt Learning [ICLR 2023]☆33Updated 2 years ago
- Code for AAAI24 paper Text-Guided Molecule Generation with Diffusion Language Model☆28Updated 2 months ago
- Code for paper: "Fine-Tuning Discrete Diffusion Models via Reward Optimization with Applications to DNA and Protein Design"☆59Updated 3 months ago
- ☆16Updated 4 months ago
- Code for "Learning Harmonic Molecular Representations on Riemannian Manifold", ICLR, 2023☆10Updated 2 years ago
- ☆118Updated last year
- Official PyTorch implementation for "Unifying Bayesian Flow Networks and Diffusion Models through Stochastic Differential Equations"☆40Updated last year
- Reproduce ICLR2025 Energy-Based Diffusion Language Models for Text Generation☆27Updated last month
- MathFusion: Enhancing Mathematical Problem-solving of LLM through Instruction Fusion (ACL 2025)☆29Updated last month