Alternatives and similar repositories for STGRNS:

Users that are interested in STGRNS are comparing it to the libraries listed below

• OSU-BMBL / deepmaps
  Single-cell biological network inference using a heterogeneous graph transformer
  ☆71Updated last month
• Su-informatics-lab / DSTG
  Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence
  ☆38Updated 2 years ago
• xiaoyeye / CCST
  Cell clustering for spatial transcriptomics data with graph neural network
  ☆59Updated last year
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆59Updated 2 years ago
• zpliulab / GENELink
  ☆27Updated 2 years ago
• kodaim1115 / scMM
  ☆17Updated 3 years ago
• mcgilldinglab / CellAgentChat
  Python agent-based model tool for inference, visualization and analysis of cell-cell communication from single-cell data
  ☆27Updated 2 months ago
• cliffren / PENCIL
  PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.
  ☆28Updated last year
• HantaoShu / DeepSEM
  ☆73Updated last year
• wukevin / babel
  Deep learning model for single-cell inference of multi-omic profiles from a single input modality.
  ☆40Updated last year
• melobio / Concerto-reproducibility
  ☆38Updated 2 years ago
• lanagarmire / Asgard
  ☆41Updated last year
• Durenlab / LINGER
  ☆96Updated 2 months ago
• QSong-github / scGCN
  scGCN is a graph convolutional networks algorithm for knowledge transfer in single cell omics
  ☆41Updated 2 years ago
• QuKunLab / SPACEL
  ☆55Updated 8 months ago
• sunyolo / DeepTFni
  A VGAE-based model to infer transcription factor regulatory network
  ☆24Updated 2 years ago
• yhr91 / GEARS_misc
  ☆17Updated 5 months ago
• YangLabHKUST / Portal
  Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets
  ☆30Updated last year
• WPZgithub / CEFCON
  Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data
  ☆22Updated 5 months ago
• drieslab / spatial-datasets
  overview of spatial datasets
  ☆71Updated last year
• theislab / scTab
  ☆57Updated 6 months ago
• zhanglabtools / CAME
  Cell-type Assignment and Module Extraction based on a heterogeneous graph neural network.
  ☆9Updated last year
• pinellolab / simba
  SIMBA: SIngle-cell eMBedding Along with features
  ☆58Updated 5 months ago
• rsinghlab / scNODE
  scNODE: Generative Model for Temporal Single Cell Transcriptomic Data Prediction
  ☆19Updated 5 months ago
• JiangBioLab / DeepCCI
  ☆21Updated 2 years ago
• zhaofangyuan98 / SDMBench
  ☆33Updated 9 months ago
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆25Updated 2 months ago
• gao-lab / SLAT
  Spatial-Linked Alignment Tool
  ☆84Updated 3 months ago
• zhoux85 / STAligner
  STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.
  ☆35Updated 11 months ago
• xiaoyeye / TFvelo
  ☆44Updated 10 months ago