Alternatives and similar repositories for STGRNS

Users that are interested in STGRNS are comparing it to the libraries listed below

• OSU-BMBL / deepmaps
  Single-cell biological network inference using a heterogeneous graph transformer
  ☆76Updated 7 months ago
• zpliulab / GENELink
  ☆34Updated 3 years ago
• xiaoyeye / CCST
  Cell clustering for spatial transcriptomics data with graph neural network
  ☆63Updated 2 years ago
• HantaoShu / DeepSEM
  ☆85Updated 2 years ago
• drieslab / spatial-datasets
  overview of spatial datasets
  ☆76Updated last year
• gao-lab / SLAT
  Spatial-Linked Alignment Tool
  ☆88Updated 9 months ago
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆67Updated 2 years ago
• Durenlab / LINGER
  ☆114Updated 4 months ago
• QSong-github / scGCN
  scGCN is a graph convolutional networks algorithm for knowledge transfer in single cell omics
  ☆41Updated 3 years ago
• sunyolo / DeepTFni
  A VGAE-based model to infer transcription factor regulatory network
  ☆28Updated 3 years ago
• Su-informatics-lab / DSTG
  Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence
  ☆39Updated 3 years ago
• ZJUFanLab / scDeepSort
  Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network
  ☆105Updated 2 years ago
• wukevin / babel
  Deep learning model for single-cell inference of multi-omic profiles from a single input modality.
  ☆43Updated 2 years ago
• labomics / midas
  PyTorch implementation of the MIDAS algorithm for single-cell multimodal data integration (Nature Biotechnology 2024).
  ☆59Updated last month
• zhoux85 / STAligner
  STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.
  ☆46Updated last year
• QIFEIDKN / STAGATE
  Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics
  ☆48Updated 2 years ago
• QuKunLab / SpatialBenchmarking
  ☆122Updated 3 years ago
• melobio / Concerto-reproducibility
  ☆40Updated 2 years ago
• JinmiaoChenLab / SpatialGlue
  SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.
  ☆69Updated last year
• Lotfollahi-lab / nichecompass
  End-to-end analysis of spatial multi-omics data
  ☆93Updated last month
• DHUDBlab / IGEGRNS
  ☆11Updated last year
• QuKunLab / SPACEL
  ☆59Updated last year
• pinellolab / simba
  SIMBA: SIngle-cell eMBedding Along with features
  ☆63Updated 11 months ago
• WPZgithub / CEFCON
  Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data
  ☆25Updated 11 months ago
• Roy-lab / scMTNI
  ☆30Updated 2 months ago
• QIFEIDKN / STAGATE_pyG
  Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics (STAGATE software based on pyG framewo…
  ☆59Updated last year
• OSU-BMBL / scDEAL
  Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data
  ☆56Updated last year
• PeterZZQ / scMoMaT
  ☆21Updated last year
• mcgilldinglab / CellAgentChat
  Python agent-based model tool for inference, visualization and analysis of cell-cell communication from single-cell data
  ☆33Updated 2 months ago
• raphael-group / paste
  Probabilistic Alignment of Spatial Transcriptomics Experiments
  ☆94Updated 7 months ago