Alternatives and similar repositories for midas

Users that are interested in midas are comparing it to the libraries listed below

• Durenlab / LINGER
  ☆112Updated 2 months ago
• SONGDONGYUAN1994 / scDesign3
  scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics
  ☆103Updated 5 months ago
• GuangyuWangLab2021 / cellDancer
  Predict RNA velocity through deep learning
  ☆70Updated last year
• jsxlei / SCALEX
  Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space
  ☆79Updated 2 months ago
• SydneyBioX / scJoint
  ☆60Updated 2 years ago
• cliffren / PENCIL
  PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.
  ☆28Updated last year
• OSU-BMBL / scDEAL
  Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data
  ☆55Updated last year
• JackieHanLab / TOSICA
  Transformer for One-Stop Interpretable Cell-type Annotation
  ☆144Updated last year
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆66Updated 2 years ago
• yunguan-wang / SPROD
  SPROD: Spatial expression profiling de-noising
  ☆37Updated 2 years ago
• lanagarmire / Asgard
  ☆43Updated last year
• madilabcode / scNET
  ☆50Updated last month
• kunwang34 / PhyloVelo
  PhyloVelo, Phylogeny-based transcriptomic velocity of single cells
  ☆43Updated last year
• Roy-lab / scMTNI
  ☆29Updated 3 weeks ago
• SuperBianC / scMulan
  Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.
  ☆61Updated last year
• theislab / regvelo
  inferring regulatory cellular dynamics
  ☆50Updated last week
• jlakkis / sciPENN
  ☆18Updated 3 years ago
• KlugerLab / GeneTrajectory
  R implementation of GeneTrajectory
  ☆63Updated last year
• bowang-lab / DeepVelo
  ☆46Updated last year
• multitalk / awesome-cell-cell-communication
  Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics
  ☆53Updated 2 months ago
• Teichlab / cellhint
  A tool for semi-automatic cell type harmonization and integration
  ☆109Updated 5 months ago
• ZhangLabGT / scMultiSim
  A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.
  ☆59Updated 7 months ago
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆63Updated last month
• datapplab / AutoClass
  ☆44Updated 3 years ago
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆51Updated 4 months ago
• calico / scBasset
  Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.
  ☆98Updated 7 months ago
• ZJUFanLab / SpaTalk
  Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data
  ☆72Updated 7 months ago
• pinellolab / dictys
  Context specific and dynamic gene regulatory network reconstruction and analysis
  ☆121Updated last month
• LiQian-XC / sctour
  A deep learning architecture for robust inference and accurate prediction of cellular dynamics
  ☆67Updated last month
• LewisLabUCSD / Ligand-Receptor-Pairs
  Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.
  ☆137Updated 2 years ago