PyTorch implementation of the MIDAS algorithm for single-cell multimodal data integration (Nature Biotechnology 2024).
☆69May 10, 2026Updated 2 months ago
Alternatives and similar repositories for midas
Users that are interested in midas are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆21Jun 17, 2024Updated 2 years ago
- ☆18Jul 30, 2022Updated 3 years ago
- ☆54Mar 4, 2025Updated last year
- mosaicMPI: mosaic multi-resolution program integration☆12Jul 9, 2026Updated last week
- Graph-linked unified embedding for single-cell multi-omics data integration☆472Feb 9, 2026Updated 5 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…☆21Jul 7, 2022Updated 4 years ago
- ☆62Jan 9, 2026Updated 6 months ago
- Alignability testing and integration of single-cell data☆24Feb 29, 2024Updated 2 years ago
- The software of Pamona, a partial manifold alignment algorithm.☆23Mar 21, 2021Updated 5 years ago
- scover☆23Nov 3, 2023Updated 2 years ago
- ☆43Jun 11, 2022Updated 4 years ago
- Repository to reproduce all analyses for Lareau*, Ludwig*, et al. 2020☆22Jul 13, 2023Updated 3 years ago
- R implementation of GeneTrajectory☆71May 9, 2026Updated 2 months ago
- ☆135Jun 10, 2022Updated 4 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆10Apr 22, 2024Updated 2 years ago
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆37Apr 2, 2025Updated last year
- Learning meaningful representations of genes☆21Jul 7, 2025Updated last year
- Lineage Tracing by Integrating Mutation and Transcriptomic data☆13Jun 16, 2020Updated 6 years ago
- benchmark for single-cell RNA-seq imputation methods☆30Mar 16, 2024Updated 2 years ago
- Benchmarking analysis of data integration tools☆425Apr 27, 2026Updated 2 months ago
- ☆15Jun 27, 2025Updated last year
- ☆17Jul 21, 2022Updated 4 years ago
- Data-driven signal detection for unbiased scRNA-seq data analysis☆24Jan 22, 2026Updated 5 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆28Jan 3, 2025Updated last year
- ☆17Jan 28, 2026Updated 5 months ago
- Python implementation of Gene Trajectory☆30Sep 4, 2024Updated last year
- Supplementary information for "Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcript…☆11Jan 15, 2024Updated 2 years ago
- Single-cell epigenomics analysis tools☆323Jul 13, 2026Updated last week
- A library for the deconvolution of bulk cell samples using single-cell RNA expression data.☆23Nov 3, 2021Updated 4 years ago
- Scripts used for the ACT paper☆12May 6, 2021Updated 5 years ago
- A Guide to the Analysis of Spatial Transcriptomics☆12Jul 29, 2024Updated last year
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆20Jul 2, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Code relating to http://dx.doi.org/10.2139/ssrn.4132721☆11Nov 24, 2022Updated 3 years ago
- ☆25Aug 15, 2023Updated 2 years ago
- Information-based dimensionality reduction☆30Dec 14, 2024Updated last year
- Code related to Swanson, et. al. for TEA-seq, ICICLE-seq, and scATAC-seq data processing, analysis, and visualization☆13Sep 20, 2021Updated 4 years ago
- Python package implementing our method MatchCLOT for multimodal single-cell data integration☆14May 19, 2023Updated 3 years ago
- CellPolaris☆14Jan 11, 2026Updated 6 months ago
- R package for distinguishing cells from background barcodes in droplet-based single-cell RNA-seq data☆12Apr 19, 2023Updated 3 years ago