PyTorch implementation of the MIDAS algorithm for single-cell multimodal data integration (Nature Biotechnology 2024).
☆62Dec 3, 2025Updated 2 months ago
Alternatives and similar repositories for midas
Users that are interested in midas are comparing it to the libraries listed below
Sorting:
- ☆21Jun 17, 2024Updated last year
- ☆18Jul 30, 2022Updated 3 years ago
- Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…☆19Jul 7, 2022Updated 3 years ago
- mosaicMPI: mosaic multi-resolution program integration☆12Dec 9, 2025Updated 2 months ago
- ☆59Jan 9, 2026Updated last month
- ☆26Aug 29, 2025Updated 6 months ago
- scover☆24Nov 3, 2023Updated 2 years ago
- Gene Expression Decomposition and Integration☆19Feb 9, 2026Updated 2 weeks ago
- ☆53Mar 4, 2025Updated 11 months ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆28Jan 3, 2025Updated last year
- Graph-linked unified embedding for single-cell multi-omics data integration☆455Feb 9, 2026Updated 2 weeks ago
- Learning meaningful representations of genes☆21Jul 7, 2025Updated 7 months ago
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆34Apr 2, 2025Updated 10 months ago
- A library for the deconvolution of bulk cell samples using single-cell RNA expression data.☆23Nov 3, 2021Updated 4 years ago
- The software of Pamona, a partial manifold alignment algorithm.☆21Mar 21, 2021Updated 4 years ago
- Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)☆25Feb 12, 2026Updated 2 weeks ago
- Alignability testing and integration of single-cell data☆21Feb 29, 2024Updated 2 years ago
- Repository to reproduce all analyses for Lareau*, Ludwig*, et al. 2020☆21Jul 13, 2023Updated 2 years ago
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆20Jul 2, 2024Updated last year
- ☆129Jun 10, 2022Updated 3 years ago
- ☆26Aug 15, 2023Updated 2 years ago
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆12Jan 10, 2024Updated 2 years ago
- Post hoc inference via multiple testing☆12Nov 2, 2025Updated 3 months ago
- Porting of Protein Activity and Pathway Inference to single cell and Python.☆12Feb 10, 2026Updated 2 weeks ago
- ☆11May 5, 2023Updated 2 years ago
- Antimicrobial Peptide Structural Evolution Miner (AMP-SEMiner), an integrated AI framework designed for the simultaneous identification o…☆13May 10, 2025Updated 9 months ago
- 将速铂下载工具进行封装，以便高效方便地批量下载SRA测序数据。☆10Sep 1, 2020Updated 5 years ago
- ☆10Mar 25, 2025Updated 11 months ago
- ☆11Aug 21, 2024Updated last year
- ☆31Jun 10, 2025Updated 8 months ago
- Single-cell epigenomics analysis tools☆309Feb 12, 2026Updated 2 weeks ago
- ☆43Jun 11, 2022Updated 3 years ago
- CellPolaris☆12Jan 11, 2026Updated last month
- ☆11Feb 19, 2024Updated 2 years ago
- Python package implementing our method MatchCLOT for multimodal single-cell data integration☆14May 19, 2023Updated 2 years ago
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆14Oct 7, 2024Updated last year
- R package for distinguishing cells from background barcodes in droplet-based single-cell RNA-seq data☆11Apr 19, 2023Updated 2 years ago
- Code relating to http://dx.doi.org/10.2139/ssrn.4132721☆11Nov 24, 2022Updated 3 years ago
- ☆52Oct 9, 2025Updated 4 months ago