labomics / midasLinks
☆54Updated last month
Alternatives and similar repositories for midas
Users that are interested in midas are comparing it to the libraries listed below
Sorting:
- Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics☆49Updated 2 weeks ago
- Predict RNA velocity through deep learning☆69Updated last year
- Additional code and analysis from the single-cell integration benchmarking project☆65Updated 2 years ago
- PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.☆28Updated last year
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆30Updated last year
- ☆17Updated 2 years ago
- ☆106Updated 3 weeks ago
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆95Updated 3 months ago
- Deep learning model for single-cell inference of multi-omic profiles from a single input modality.☆42Updated last year
- ☆42Updated 2 weeks ago
- Single cell omics biology annotations☆51Updated last month
- ☆59Updated last year
- ☆21Updated 11 months ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆74Updated last month
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆42Updated 3 years ago
- ☆42Updated last year
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last year
- ☆30Updated last month
- Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data☆54Updated 10 months ago
- R implementation of GeneTrajectory☆58Updated last year
- ☆26Updated 5 months ago
- ☆44Updated 2 months ago
- scLearn:Learning for single cell assignment☆35Updated 5 months ago
- ☆47Updated last year
- A benchmark of batch-effect correction methods for single-cell RNA sequencing data☆76Updated 3 years ago
- SPROD: Spatial expression profiling de-noising☆36Updated last year
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆71Updated 4 months ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆61Updated 3 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆61Updated last year
- A deep learning architecture for robust inference and accurate prediction of cellular dynamics☆63Updated last year