labomics / midas
☆41Updated 2 months ago
Related projects ⓘ
Alternatives and complementary repositories for midas
- ☆79Updated last week
- Additional code and analysis from the single-cell integration benchmarking project☆55Updated last year
- ☆21Updated 5 months ago
- PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.☆26Updated 10 months ago
- Predict RNA velocity through deep learning☆64Updated 11 months ago
- Must-read papers on deep learning based methodology paper for single cell data analysis☆18Updated 3 years ago
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆86Updated 2 weeks ago
- Single cell omics biology annotations☆48Updated 2 months ago
- Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics☆28Updated last week
- ☆40Updated 10 months ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆38Updated 3 years ago
- Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data☆48Updated 3 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆60Updated 6 months ago
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆109Updated 2 months ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆31Updated last year
- ☆47Updated 9 months ago
- A novel unsupervised batch removal framework, called iMAP, based on neural networks.☆35Updated 2 years ago
- Deep learning model for single-cell inference of multi-omic profiles from a single input modality.☆39Updated last year
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆62Updated 2 weeks ago
- ☆28Updated 2 months ago
- ☆49Updated 3 months ago
- SPROD: Spatial expression profiling de-noising☆33Updated last year
- R implementation of GeneTrajectory☆49Updated 7 months ago
- ☆15Updated 2 years ago
- A tool for semi-automatic cell type harmonization and integration☆94Updated 10 months ago
- ☆59Updated last year
- Accelerated, Python-only, single-cell integration benchmarking metrics☆49Updated this week
- ☆28Updated last year
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆40Updated last year
- MAGIC - imputation and de-noising single-cell RNA seq data sets☆25Updated 5 years ago