Alternatives and similar repositories for ruby-minimap2

Users that are interested in ruby-minimap2 are comparing it to the libraries listed below

• CshlSiepelLab / RPHAST
  RPHAST: Phylogenetic Analysis with Space/Time Models in R
  ☆11Updated last year
• lh3 / sdust
  Symmetric DUST for finding low-complexity regions in DNA sequences
  ☆45Updated 6 months ago
• bcgsc / RAILS
  🚝RAILS and 👞🔨Cobbler: Assembly Improvement by Long Sequence Scaffolding/Gap-filling
  ☆27Updated 2 years ago
• natir / fpa
  Filter of Pairwise Alignement
  ☆44Updated 4 years ago
• llecompte / SVJedi
  SV genotyping with long reads
  ☆40Updated 2 years ago
• PacificBiosciences / apps-scripts
  Miscellaneous scripts for applications of PacBio systems
  ☆27Updated 3 years ago
• yeban / ncbi-blast-dbs
  Fast download BLAST databases from NCBI.
  ☆35Updated 2 years ago
• nanoporegenomics / napu_wf
  WDL workflows for variant calling and assembly using ONT
  ☆38Updated this week
• pangenome / smoothxg
  linearize and simplify variation graphs using blocked partial order alignment
  ☆60Updated 6 months ago
• mfranberg / svsim
  Simulation toolbox for structural variations.
  ☆10Updated 6 years ago
• orangeSi / GSSplayground
  Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), ad…
  ☆33Updated 5 years ago
• bcgsc / ntEdit
  ✏️ Genome assembly polishing & SNV detection
  ☆72Updated 4 months ago
• bcgsc / ntJoin
  🔗Genome assembly scaffolder using minimizer graphs
  ☆85Updated last year
• bcgsc / LINKS
  ⛓ Long Interval Nucleotide K-mer Scaffolder
  ☆73Updated 10 months ago
• s4hts / HTStream
  A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes
  ☆51Updated last year
• VGP / vgp-tools
  ☆28Updated 9 months ago
• HudsonAlpha / fmlrc2
  ☆49Updated 2 years ago
• NickRoz1 / gbam
  ☆16Updated 5 months ago
• PacificBiosciences / bam2fastx
  Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.
  ☆39Updated 2 years ago
• arangrhie / merfin
  Evaluate variant calls and its combination with k-mer multiplicity
  ☆67Updated 3 years ago
• tony-kuo / eagle
  ☆22Updated last year
• SJTU-CGM / HUPAN
  Human pan-genome analysis pipeline
  ☆31Updated 5 years ago
• ydLiu-HIT / deSALT
  deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads
  ☆44Updated 3 years ago
• arshajii / ema
  Fast & accurate alignment of barcoded short-reads
  ☆32Updated 2 years ago
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆47Updated 4 years ago
• bcgsc / xmatchview
  🗻 Visualization of genome/gene sequence synteny
  ☆42Updated 2 years ago
• shilpagarg / WHdenovo
  ☆46Updated 5 years ago
• nanoporetech / pipeline-nanopore-denovo-isoforms
  Pipeline for de novo clustering of long transcriptomic reads
  ☆26Updated 4 years ago
• mkpython3 / Mutation-Simulator
  A tool for simulating random mutations in any genome
  ☆43Updated 2 years ago
• OpenGene / UniqueKMER
  Generate unique KMERs for every contig in a FASTA file
  ☆49Updated 3 years ago