hoffmangroup / segway
Application for semi-automated genomic annotation.
☆16Updated 9 months ago
Alternatives and similar repositories for segway:
Users that are interested in segway are comparing it to the libraries listed below
- ☆25Updated 2 months ago
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆43Updated 2 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 3 years ago
- A Snakemake pipeline for quality control and reproducible processing of chromatin profiling data☆20Updated 3 years ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆38Updated last year
- CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.☆21Updated last month
- Construct a Physical Map from Linked Reads☆18Updated last year
- ☆19Updated 4 months ago
- A tool for projecting genomic alignments to transcriptomic coordinates☆36Updated 10 months ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 2 years ago
- Annotating principal splice isoforms☆14Updated 6 months ago
- Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…☆21Updated last year
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆34Updated last week
- Version II of Mandalorion☆32Updated 6 years ago
- Benchmarking long-read RNA-seq analysis tools☆27Updated 2 months ago
- Fast FASTQ sample demultiplexing in Rust.☆62Updated 2 weeks ago
- Detect somatic variants from tumor and normal WGS/WXS data☆15Updated 2 months ago
- ☆23Updated 4 years ago
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆68Updated 4 months ago
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆51Updated 2 months ago
- ☆28Updated 7 years ago
- MNase-seq analysis pipeline using BWA and DANPOS2.☆11Updated 11 months ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- ☆29Updated 9 months ago
- ☆26Updated 3 weeks ago
- ☆21Updated 2 months ago
- Long read to rMATS☆31Updated last year
- Single-cell Hi-C data analysis toolbox☆26Updated 3 years ago
- Differential expression and allelic analysis, nonparametric statistics☆28Updated 3 months ago
- A template repository for Snakemake pipepline(s) and a python command-line toolkit.☆28Updated 2 weeks ago