EBISPOT / goci

Related projects ⓘ

Alternatives and complementary repositories for goci

• gogetdata / ggd-recipes
  conda recipes for genomic data
  ☆85Updated 3 years ago
• lifebit-ai / GATK
  Germline Variant Calling Nextflow Pipeline Based On GATK4 Best Practices
  ☆12Updated 4 years ago
• BD2KGenomics / toil-rnaseq
  UC Santa Cruz Computational Genomics Lab's Toil-based RNA-seq pipeline
  ☆40Updated 4 years ago
• BD2KGenomics / toil-scripts
  Toil workflows for common genomic pipelines
  ☆33Updated 5 years ago
• Illumina / happyR
  R tools to interact with hap.py output
  ☆15Updated 5 years ago
• EliLillyCo / pytest-wdl
  WDL plugin for pytest
  ☆48Updated last year
• adimitromanolakis / sim1000G
  Simulation of rare and common variants based on 1000 genomes data
  ☆18Updated 3 years ago
• dnanexus / dxWDL
  Workflow Description Language compiler for the DNAnexus platform
  ☆40Updated last year
• stjudecloud / oliver
  An opinionated Cromwell orchestration manager.
  ☆40Updated last year
• macarthur-lab / gnomad_browser
  gnomAD browser pre-ASHG 2018
  ☆33Updated 4 years ago
• common-workflow-lab / wdl2cwl
  [Experimental] Workflow Definition Language (WDL) to CWL
  ☆28Updated 2 years ago
• Ensembl / ensembl-tools
  Ensembl tools
  ☆34Updated last week
• grst / snakemake_nextflow_wdl
  simple comparison of snakemake, nextflow and cromwell/wdl
  ☆49Updated 4 years ago
• Ensembl / postgap
  Linking GWAS studies to genes through cis-regulatory datasets
  ☆39Updated last year
• maxplanck-ie / rna-seq-qc
  Rna-seq pipeline, From FASTQ to differential expression analysis...
  ☆20Updated 7 years ago
• ncbi / JUDI
  This repository contains the source code of JUDI, a workflow management system for developing complex bioinformatics software with many p…
  ☆33Updated 2 years ago
• chanzuckerberg / idseq-workflows
  Portable WDL workflows for IDseq production pipelines
  ☆31Updated 2 years ago
• TheJacksonLaboratory / LIRICAL
  LIkelihood Ratio Interpretation of Clinical AbnormaLities
  ☆24Updated 4 months ago
• TheJacksonLaboratory / CloudNeo
  CWL implementation of CloudNeo: A cloud pipeline for identifying patient-specific tumor neoantigens
  ☆19Updated 5 years ago
• greenelab / generic-expression-patterns
  Distinguishing between generic and experiment-specific gene expression signals.
  ☆12Updated last year
• macarthur-lab / omim
  Repo for downloading and storing OMIM data
  ☆18Updated 8 years ago
• broadinstitute / fiss
  FireCloud Service Selector (FISS) -- Python bindings and CLI for FireCloud execution engine
  ☆29Updated 7 months ago
• sbg / smart-variant-filtering
  ☆30Updated 3 years ago
• nellore / rail
  Scalable RNA-seq analysis
  ☆73Updated 3 years ago
• sbg / sevenbridges-python
  SevenBridges Python Api bindings
  ☆46Updated 3 weeks ago
• stjudecloud / workflows
  Bioinformatics workflows developed for and used on the St. Jude Cloud project.
  ☆34Updated last week
• cancerit / cgpBigWig
  BigWig manpulation tools using libBigWig and htslib
  ☆28Updated 3 months ago
• iobio / vcf.iobio.io
  ☆27Updated last year
• bigdatagenomics / cannoli
  Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.
  ☆39Updated 6 months ago
• cancerit / alleleCount
  Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…
  ☆43Updated 2 years ago