imgag / ngs-bitsLinks
Short-read and long-read sequencing tools for diagnostics
☆168Updated this week
Alternatives and similar repositories for ngs-bits
Users that are interested in ngs-bits are comparing it to the libraries listed below
Sorting:
- Structural variation and indel detection by local assembly☆249Updated 2 months ago
- ABRA2☆95Updated 2 years ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆172Updated last year
- A structural variation pipeline for short-read sequencing☆195Updated this week
- Workflows for germline short variant discovery with GATK4☆138Updated 4 years ago
- Generate duplex/single consensus reads to reduce sequencing noises and remove duplications☆126Updated 2 years ago
- Gene fusion detection and visualization☆127Updated 3 years ago
- Tools for processing and analyzing structural variants.☆154Updated 3 years ago
- Scalable gVCF merging and joint variant calling for population sequencing projects☆171Updated last year
- A tool set for short variant discovery in genetic sequence data.☆202Updated 4 years ago
- Jasmine: SV Merging Across Samples☆231Updated 11 months ago
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆206Updated 4 years ago
- Annotation and Ranking of Structural Variation☆267Updated last month
- Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants …☆174Updated 5 years ago
- TransVar - multiway annotator for precision medicine☆126Updated 2 years ago
- This repository contains information about latest release from Genome in a Bottle project☆75Updated 6 years ago
- The nimble & robust variant annotator☆188Updated last year
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆165Updated 2 years ago
- Bayesian genotyper for structural variants☆136Updated 4 years ago
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆194Updated 2 weeks ago
- Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data☆91Updated 2 months ago
- Technology agnostic long read analysis pipeline for transcriptomes☆152Updated last year
- Population-scale genotyping using pangenome graphs☆194Updated 10 months ago
- A suite of tools for detecting expansions of short tandem repeats☆83Updated 2 years ago
- a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads☆208Updated last month
- VarDict☆200Updated last year
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆250Updated 4 months ago
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆151Updated 3 months ago
- tools for adding mutations to existing .bam files, used for testing mutation callers☆248Updated last year
- Software program for checking sample matching for NGS data☆136Updated last year