imgag / ngs-bitsLinks
Short-read and long-read sequencing tools for diagnostics
☆168Updated this week
Alternatives and similar repositories for ngs-bits
Users that are interested in ngs-bits are comparing it to the libraries listed below
Sorting:
- Generate duplex/single consensus reads to reduce sequencing noises and remove duplications☆125Updated 2 years ago
- A structural variation pipeline for short-read sequencing☆194Updated this week
- ABRA2☆93Updated 2 years ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆172Updated last year
- Structural variation and indel detection by local assembly☆248Updated last month
- Tools for processing and analyzing structural variants.☆154Updated 3 years ago
- A tool set for short variant discovery in genetic sequence data.☆202Updated 4 years ago
- TransVar - multiway annotator for precision medicine☆126Updated 2 years ago
- Annotation and Ranking of Structural Variation☆263Updated 3 weeks ago
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆205Updated 4 years ago
- Gene fusion detection and visualization☆128Updated 3 years ago
- Workflows for germline short variant discovery with GATK4☆138Updated 4 years ago
- Bayesian genotyper for structural variants☆135Updated 4 years ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆163Updated 2 years ago
- VarDict☆198Updated last year
- Fast HLA type inference from whole-genome data☆138Updated 6 months ago
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆150Updated 2 months ago
- A suite of tools for detecting expansions of short tandem repeats☆83Updated 2 years ago
- a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads☆205Updated 3 weeks ago
- Scalable gVCF merging and joint variant calling for population sequencing projects☆171Updated last year
- Finder of Somatic Fusion Genes in RNA-seq data☆147Updated last month
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆199Updated 2 months ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆99Updated last year
- Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants …☆174Updated 5 years ago
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆194Updated 3 weeks ago
- tools for adding mutations to existing .bam files, used for testing mutation callers☆246Updated last year
- GATK RNA-Seq Variant Calling in Nextflow☆136Updated 2 years ago
- A fast lossless FASTQ compressor with ultra-high compression ratio☆142Updated 5 months ago
- SV detection from paired end reads mapping☆117Updated 6 years ago
- samblaster: a tool to mark duplicates and extract discordant and split reads from sam files.☆235Updated 4 years ago