imgag / ngs-bitsLinks
Short-read and long-read sequencing tools for diagnostics
☆162Updated last week
Alternatives and similar repositories for ngs-bits
Users that are interested in ngs-bits are comparing it to the libraries listed below
Sorting:
- Generate duplex/single consensus reads to reduce sequencing noises and remove duplications☆123Updated last year
- ABRA2☆92Updated 2 years ago
- Structural variation and indel detection by local assembly☆247Updated last month
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆164Updated 11 months ago
- A structural variation pipeline for short-read sequencing☆191Updated this week
- A tool set for short variant discovery in genetic sequence data.☆200Updated 4 years ago
- Gene fusion detection and visualization☆128Updated 3 years ago
- Tools for processing and analyzing structural variants.☆154Updated 3 years ago
- Technology agnostic long read analysis pipeline for transcriptomes☆147Updated last year
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆194Updated last week
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆161Updated 2 years ago
- Workflows for germline short variant discovery with GATK4☆138Updated 4 years ago
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆203Updated 4 years ago
- Bayesian genotyper for structural variants☆134Updated 4 years ago
- Annotation and Ranking of Structural Variation☆262Updated 3 weeks ago
- VarDict☆198Updated last year
- Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data☆86Updated last month
- Scalable gVCF merging and joint variant calling for population sequencing projects☆164Updated last year
- software tools for haplotype assembly from sequence data☆221Updated 6 months ago
- The nimble & robust variant annotator☆183Updated last year
- Software program for checking sample matching for NGS data☆134Updated last year
- Population-scale genotyping using pangenome graphs☆188Updated 7 months ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆237Updated 3 weeks ago
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆197Updated 3 weeks ago
- ☆123Updated last week
- DRAGEN open-source mapper☆176Updated last year
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads☆202Updated 2 weeks ago
- ☆131Updated last week
- A tool for estimating repeat sizes☆195Updated last year