DeplanckeLab / BRB-seqToolsLinks
Suite of tools for processing BRB-seq data
☆28Updated 3 weeks ago
Alternatives and similar repositories for BRB-seqTools
Users that are interested in BRB-seqTools are comparing it to the libraries listed below
Sorting:
- ScaleBio Single-cell RNA Nextflow Workflow☆31Updated last month
- From RNA-seq raw reads to enriched pathways by DEGs☆32Updated last year
- RNAseq pipeline based on snakemake☆26Updated 2 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆59Updated 4 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆66Updated 5 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆59Updated last week
- A continually expanding collection of RNA-seq tools☆50Updated 8 months ago
- HMMRATAC peak caller for ATAC-seq data☆100Updated 7 months ago
- A toolkit for QC and visualization of ATAC-seq results.☆70Updated 5 months ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆59Updated 6 months ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆42Updated 6 months ago
- Pipeline for processing inDrops sequencing data☆76Updated 6 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 7 years ago
- Estimation of Promoter Activity from RNA-Seq data☆53Updated 3 years ago
- Full-length transcriptome splicing and mutation analysis☆83Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- An R interface to the MEME Suite☆50Updated last week
- Tutorial for AMSI BioInfoSummer 2018☆29Updated 6 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 4 months ago
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆68Updated 3 months ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆76Updated 3 months ago
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆49Updated this week
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆52Updated 3 years ago
- Genome-wide assessment of differential translations with ribosome profiling data☆19Updated last month
- A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays☆30Updated last year
- ☆49Updated 4 years ago
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆75Updated 11 months ago
- SingleCell Nanopore sequencing data analysis☆60Updated 3 weeks ago
- This package provides a function to reformat lists of genome coverage files, such as bigWig of bam files, into the directory structure of…☆28Updated last year
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆39Updated 2 weeks ago