DeplanckeLab / BRB-seqToolsLinks
Suite of tools for processing BRB-seq data
☆28Updated last month
Alternatives and similar repositories for BRB-seqTools
Users that are interested in BRB-seqTools are comparing it to the libraries listed below
Sorting:
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆66Updated 5 years ago
- A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays☆30Updated last year
- Transcript quantification import for modular pipelines☆140Updated 2 weeks ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆43Updated 7 months ago
- A Python-based EGA download client☆101Updated 9 months ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆75Updated last month
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆64Updated last week
- R package for bcbio RNA-seq analysis.☆62Updated 10 months ago
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆69Updated 3 months ago
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 4 months ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆115Updated 5 months ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆59Updated 4 years ago
- Full-length transcriptome splicing and mutation analysis☆83Updated last year
- From RNA-seq raw reads to enriched pathways by DEGs☆32Updated last year
- Fuji plot—a circos representation of multiple GWAS results—☆89Updated last month
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆59Updated 7 months ago
- Estimation of Promoter Activity from RNA-Seq data☆53Updated last week
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆68Updated this week
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆108Updated 5 years ago
- GENome Organisation Visual Analytics☆78Updated 6 months ago
- Intervene: a tool for intersection and visualization of multiple genomic region and gene sets☆142Updated last year
- integrated RNA-seq Analysis Pipeline☆84Updated 6 years ago
- This package provides a function to reformat lists of genome coverage files, such as bigWig of bam files, into the directory structure of…☆28Updated last year
- mgatk: mitochondrial genome analysis toolkit☆108Updated 5 months ago
- A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic …☆61Updated last month
- Config files used to define parameters specific to compute environments at different Institutions☆101Updated last week
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated last year
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆49Updated 3 weeks ago
- RNAseq pipeline based on snakemake☆26Updated 2 years ago