DeplanckeLab / BRB-seqToolsLinks
Suite of tools for processing BRB-seq data
☆28Updated last year
Alternatives and similar repositories for BRB-seqTools
Users that are interested in BRB-seqTools are comparing it to the libraries listed below
Sorting:
- Estimation of Promoter Activity from RNA-Seq data☆53Updated 3 years ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆87Updated 2 months ago
- ScaleBio Single-cell RNA Nextflow Workflow☆30Updated last month
- Clone of the Bioconductor repository for the DropletUtils package.☆59Updated last week
- A toolkit for QC and visualization of ATAC-seq results.☆70Updated 4 months ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- ☆69Updated last year
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆76Updated 3 months ago
- Publication quality NGS track plotting☆113Updated 2 years ago
- nucleosome calling using ATAC-seq☆106Updated 4 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆66Updated 5 years ago
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆67Updated 2 months ago
- This package provides a function to reformat lists of genome coverage files, such as bigWig of bam files, into the directory structure of…☆28Updated last year
- Reference transcriptome indices build from kallisto for popular organisms☆42Updated last year
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 3 years ago
- mgatk: mitochondrial genome analysis toolkit☆108Updated 4 months ago
- From RNA-seq raw reads to enriched pathways by DEGs☆32Updated last year
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 6 years ago
- Ultraperformant reimplementation of SICER☆56Updated 3 years ago
- Pipeline for processing inDrops sequencing data☆76Updated 6 years ago
- SingleCell Nanopore sequencing data analysis☆60Updated last week
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated 2 years ago
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆49Updated last month
- Hands-on training on the latest methodologies and applications for the analysis of nucleic acids from eukaryotic single cells☆16Updated 10 months ago
- Detecting intron retention from RNA-Seq experiments☆55Updated 10 months ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆73Updated this week
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 3 months ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆81Updated 4 months ago
- ☆18Updated 3 years ago
- Full-length transcriptome splicing and mutation analysis☆83Updated 11 months ago