DeplanckeLab / BRB-seqTools
Suite of tools for processing BRB-seq data
☆28Updated last year
Alternatives and similar repositories for BRB-seqTools:
Users that are interested in BRB-seqTools are comparing it to the libraries listed below
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 6 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆65Updated 4 years ago
- ☆48Updated 3 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆67Updated 2 months ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- Pipeline for processing inDrops sequencing data☆75Updated 6 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated last year
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆37Updated 3 months ago
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆46Updated 3 weeks ago
- A continually expanding collection of RNA-seq tools☆48Updated 5 months ago
- From RNA-seq raw reads to enriched pathways by DEGs☆32Updated 10 months ago
- This package provides a function to reformat lists of genome coverage files, such as bigWig of bam files, into the directory structure of…☆28Updated 10 months ago
- RNAseq pipeline based on snakemake☆25Updated 2 years ago
- ScaleBio Single-cell RNA Nextflow Workflow☆29Updated last month
- Publication quality NGS track plotting☆111Updated 2 years ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆59Updated last month
- Clone of the Bioconductor repository for the DropletUtils package.☆57Updated 3 months ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆57Updated 3 months ago
- Full-length transcriptome splicing and mutation analysis☆80Updated 8 months ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆69Updated 2 months ago
- HMMRATAC peak caller for ATAC-seq data☆100Updated 4 months ago
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆67Updated this week
- Single cell Nanopore sequencing data for Genotype and Phenotype☆46Updated 2 months ago
- collection of notebooks with different cytoscape workflows☆49Updated last year
- Estimation of Promoter Activity from RNA-Seq data☆51Updated 3 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆74Updated last week
- optimization of ribosome P-site positioning in ribosome profiling data☆48Updated 2 weeks ago
- ☆67Updated last year
- Workshop • Analysis of RNA-seq data☆35Updated 11 months ago