DeplanckeLab / BRB-seqToolsLinks
Suite of tools for processing BRB-seq data
☆30Updated 6 months ago
Alternatives and similar repositories for BRB-seqTools
Users that are interested in BRB-seqTools are comparing it to the libraries listed below
Sorting:
- Transcript quantification import for modular pipelines☆142Updated 2 months ago
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆76Updated 2 months ago
- A rust framework to make using alevin-fry even simpler☆60Updated 7 months ago
- A Python-based EGA download client☆108Updated last year
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆120Updated 2 weeks ago
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆110Updated 5 years ago
- R package for extracting and visualizing mutational patterns in base substitution catalogues☆108Updated 3 years ago
- A pipeline and a framework for NGS analysis (RNA-seq and scRNA-seq)☆54Updated last week
- R package for bcbio RNA-seq analysis.☆63Updated last year
- A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays☆30Updated 2 years ago
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆148Updated 5 years ago
- A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methyl…☆48Updated 2 years ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆81Updated 6 months ago
- optimization of ribosome P-site positioning in ribosome profiling data☆55Updated 9 months ago
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆77Updated last year
- mgatk: mitochondrial genome analysis toolkit☆108Updated 11 months ago
- Streamlining SLAM-seq analysis with ultra-high sensitivity☆47Updated last year
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆165Updated 2 months ago
- ☆73Updated 3 years ago
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆50Updated 2 years ago
- ☆72Updated 2 years ago
- R package for genomic feature analysis and visualization☆79Updated 8 months ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆51Updated last month
- Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.☆70Updated 4 years ago
- GTEx Visualizations☆65Updated 4 years ago
- integrated RNA-seq Analysis Pipeline☆84Updated 6 years ago
- A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic …☆78Updated 6 months ago
- collection of notebooks with different cytoscape workflows☆50Updated 2 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆72Updated 11 months ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆60Updated 5 years ago