Python bindings for the parasail C library.
☆118Sep 4, 2024Updated 2 years ago
Alternatives and similar repositories for parasail-python
Users that are interested in parasail-python are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pairwise Sequence Alignment Library☆288Aug 27, 2025Updated last year
- Rust bindings to parasail, a SIMD-accelerated pairwise sequence alignment library.☆21Jul 25, 2016Updated 10 years ago
- ☆321Jan 15, 2026Updated 8 months ago
- Python bindings to bwa mem☆32Mar 26, 2020Updated 6 years ago
- JSON-based FON (Feature Object Notation) format and tools to simplify genomic annotations usage☆13Jun 11, 2025Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- For bluntifying overlapped GFAs☆13Jul 26, 2024Updated 2 years ago
- Open compressed files in Python☆81Jun 5, 2026Updated 3 months ago
- Local alignment search with k-bounded matching statistics.☆24Updated this week
- ☆15Dec 3, 2024Updated last year
- A command line program for large scale buffering between piped programs☆17Nov 19, 2021Updated 4 years ago
- Efficiently read and write sequencing data from Python☆71Updated this week
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆59Sep 13, 2026Updated last week
- Rust bindings to minimap2 library☆113Updated this week
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆46Mar 24, 2026Updated 5 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).☆11Jul 20, 2025Updated last year
- Non-sequential structural alignment program for protein structure☆19Apr 10, 2026Updated 5 months ago
- Simple Python interface to CoverM's fast coverage estimation functions☆11Dec 20, 2024Updated last year
- Python package to plot a phylogenetic tree on an existing matplotlib axis.☆29Jul 21, 2025Updated last year
- Pairwise nucleotide alignment benchmark of Rust bindings☆32Jul 27, 2023Updated 3 years ago
- Python wrapper for wavefront alignment using WFA2-lib☆39Nov 19, 2024Updated last year
- SIMD C/C++ library for massive optimal sequence alignment (local/SW, infix, overlap, global)☆41Jan 12, 2024Updated 2 years ago
- Just another minhash implementation.☆13Updated this week
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Apr 21, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- a tool for designing primer panels for multiplex PCR.☆111Feb 5, 2024Updated 2 years ago
- Python port of the R Bioconductor `seqLogo` package☆37Feb 20, 2026Updated 7 months ago
- RNA virus analysis toolkit☆23Updated this week
- WFA-lib: Wavefront alignment algorithm library v2☆228Aug 7, 2026Updated last month
- Nanopore basecalling and consensus decoding☆46Jul 22, 2022Updated 4 years ago
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆197Sep 1, 2026Updated 2 weeks ago
- Fast FASTQ sample demultiplexing in Rust.☆71Aug 28, 2026Updated 3 weeks ago
- Randomly subsample sequencing reads or alignments☆274Sep 1, 2026Updated 2 weeks ago
- [DEPRECATED] Bamboo: a tool for quality control and error profiling of long-read sequencing data.☆15Mar 26, 2026Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆22Jul 28, 2022Updated 4 years ago
- a python package for fast random access to sequences from plain and gzipped FASTA/Q files☆298Jun 10, 2026Updated 3 months ago
- ☆16Aug 10, 2026Updated last month
- Python language bindings for bwa☆12Jul 19, 2026Updated 2 months ago
- Quality of life improvements for Bioinformatics in Python.☆35Updated this week
- LAAVA: Long-read AAV Analysis☆13Dec 9, 2025Updated 9 months ago
- Fast, parallel Rust implementation of Prodigal for prokaryotic gene prediction in microbial genomes☆29Jul 26, 2026Updated last month