Alternatives and similar repositories for parasail-python

Users that are interested in parasail-python are comparing it to the libraries listed below

• KatyBrown / CIAlign
  ☆133Updated last year
• refresh-bio / agc
  Assembled Genomes Compressor
  ☆176Updated last year
• EddyRivasLab / infernal
  RNA secondary structure/sequence profiles for homology search and alignment
  ☆123Updated last month
• urmi-21 / orfipy
  Fast and flexible ORF finder
  ☆78Updated 4 years ago
• arvestad / alv
  A console-based alignment viewer
  ☆118Updated 7 months ago
• bxlab / bx-python
  Tools for manipulating biological data, particularly multiple sequence alignments
  ☆159Updated last week
• lmdu / pyfastx
  a python package for fast random access to sequences from plain and gzipped FASTA/Q files
  ☆289Updated 3 weeks ago
• open2c / bioframe
  Genomic interval operations on Pandas DataFrames
  ☆188Updated this week
• nanoporetech / kmer_models
  Predictive kmer models for development use
  ☆63Updated 2 years ago
• igvteam / igv-notebook
  Module for embedding igv.js in an IPython notebook
  ☆80Updated 11 months ago
• WGLab / NanoCaller
  Variant calling tool for long-read sequencing data
  ☆117Updated 10 months ago
• openvax / gtfparse
  Parsing tools for GTF (gene transfer format) files
  ☆125Updated 11 months ago
• BenLangmead / aws-indexes
  Catalog of genomic indexes freely available from public clouds
  ☆67Updated 2 weeks ago
• snugel / cas-offinder
  An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.
  ☆95Updated 3 years ago
• epi2me-labs / wf-clone-validation
  ☆39Updated last month
• sequana / sequana
  Sequana: a set of Snakemake NGS pipelines
  ☆151Updated 2 weeks ago
• ogotoh / spaln
  Genome mapping and spliced alignment of cDNA or amino acid sequences
  ☆110Updated last week
• betteridiot / bamnostic
  a pure Python multi-version tolerant, runtime and OS-agnostic Binary Alignment Map (BAM) file parser and random access tool
  ☆99Updated last week
• IndexThePlanet / Logan
  Logan Unitigs and Contigs
  ☆184Updated 4 months ago
• yangao07 / abPOA
  abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
  ☆134Updated 3 months ago
• HKU-BAL / ClairS
  ClairS - a deep-learning method for long-read somatic small variant calling
  ☆102Updated 2 weeks ago
• bioinfomaticsCSU / deepsignal
  Detecting methylation using signal-level features from Nanopore sequencing reads
  ☆118Updated 2 years ago
• dbikard / genomenotebook
  A genome browser in your Jupyter notebook
  ☆31Updated 8 months ago
• rvaser / spoa
  SIMD partial order alignment tool/library
  ☆171Updated 4 months ago
• althonos / rich-msa
  A Rich renderable for viewing Multiple Sequence Alignments in the terminal.
  ☆85Updated 3 years ago
• nanoporetech / bwapy
  Python bindings to bwa mem
  ☆32Updated 5 years ago
• nanoporetech / taiyaki
  Training models for basecalling Oxford Nanopore reads
  ☆115Updated 4 years ago
• nanoporetech / ont_fast5_api
  Oxford Nanopore Technologies fast5 API software
  ☆154Updated last year
• mckennalab / Circuitseq
  Nanopore Plasmid Sequencing
  ☆34Updated 2 years ago
• alimanfoo / pysamstats
  A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …
  ☆195Updated this week