Python bindings for the parasail C library.
☆117Sep 4, 2024Updated last year
Alternatives and similar repositories for parasail-python
Users that are interested in parasail-python are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pairwise Sequence Alignment Library☆280Aug 27, 2025Updated 8 months ago
- Rust bindings to parasail, a SIMD-accelerated pairwise sequence alignment library.☆21Jul 25, 2016Updated 9 years ago
- ☆317Jan 15, 2026Updated 4 months ago
- Python bindings to bwa mem☆32Mar 26, 2020Updated 6 years ago
- Python package to plot a phylogenetic tree on an existing matplotlib axis.☆29Jul 21, 2025Updated 10 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- For bluntifying overlapped GFAs☆13Jul 26, 2024Updated last year
- Open compressed files in Python☆81Oct 12, 2025Updated 7 months ago
- A command line program for large scale buffering between piped programs☆17Nov 19, 2021Updated 4 years ago
- ☆13Dec 3, 2024Updated last year
- Efficiently read and write sequencing data from Python☆70Oct 12, 2025Updated 7 months ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆59Mar 27, 2026Updated last month
- Rust bindings to minimap2 library☆111May 3, 2026Updated 2 weeks ago
- R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).☆11Jul 20, 2025Updated 10 months ago
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆41Mar 24, 2026Updated last month
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Non-sequential structural alignment program for protein structure☆19Apr 10, 2026Updated last month
- Simple Python interface to CoverM's fast coverage estimation functions☆11Dec 20, 2024Updated last year
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Jul 27, 2023Updated 2 years ago
- Python wrapper for wavefront alignment using WFA2-lib☆38Nov 19, 2024Updated last year
- SIMD C/C++ library for massive optimal sequence alignment (local/SW, infix, overlap, global)☆40Jan 12, 2024Updated 2 years ago
- a tool for designing primer panels for multiplex PCR.☆108Feb 5, 2024Updated 2 years ago
- Just another minhash implementation.☆12May 7, 2026Updated 2 weeks ago
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Apr 21, 2023Updated 3 years ago
- WFA-lib: Wavefront alignment algorithm library v2☆214Mar 18, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Nanopore basecalling and consensus decoding☆46Jul 22, 2022Updated 3 years ago
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆195May 1, 2026Updated 2 weeks ago
- Python port of the R Bioconductor `seqLogo` package☆36Feb 20, 2026Updated 3 months ago
- Randomly subsample sequencing reads or alignments☆265May 11, 2026Updated last week
- ☆22Jul 28, 2022Updated 3 years ago
- a python package for fast random access to sequences from plain and gzipped FASTA/Q files☆295Jan 16, 2026Updated 4 months ago
- Fast FASTQ sample demultiplexing in Rust.☆69Apr 30, 2026Updated 3 weeks ago
- Python language bindings for bwa☆12Mar 27, 2026Updated last month
- FASTA and FASTQ parsing in Rust☆85Mar 14, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Quality of life improvements for Bioinformatics in Python.☆33May 7, 2026Updated 2 weeks ago
- JSON-based FON (Feature Object Notation) format and tools to simplify genomic annotations usage☆13Jun 11, 2025Updated 11 months ago
- LAAVA: Long-read AAV Analysis☆13Dec 9, 2025Updated 5 months ago
- a pure Python multi-version tolerant, runtime and OS-agnostic Binary Alignment Map (BAM) file parser and random access tool☆99Jan 27, 2026Updated 3 months ago
- Fast FASTX parsing and k-mer methods in Rust☆211Apr 20, 2026Updated last month
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆29Aug 20, 2025Updated 9 months ago
- [DEPRECATED] Bamboo: a tool for quality control and error profiling of long-read sequencing data.☆15Mar 26, 2026Updated last month