nucleic acid folding
☆109Aug 12, 2025Updated 8 months ago
Alternatives and similar repositories for seqfold
Users that are interested in seqfold are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- a JavaScript DNA, RNA, and protein sequence viewer☆316Updated this week
- An amino acid sequence annotator☆17May 15, 2025Updated 11 months ago
- A route planner for DNA assembly☆37May 12, 2025Updated 11 months ago
- Simple oligo analysis and primer design☆190Jan 26, 2026Updated 3 months ago
- repository-based plasmid design☆31Nov 28, 2022Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A Python molecular biology CAD tool with a dead-simple user interface☆13Dec 8, 2022Updated 3 years ago
- The ViennaRNA Package☆403Feb 24, 2026Updated 2 months ago
- A PCR primer tool for DNA assembly flows☆33Apr 24, 2024Updated 2 years ago
- RNAView identifies base pairs that are formed in nucleic acid structures and classifies them according to the system of Leontis and Westh…☆20Jul 11, 2024Updated last year
- DNA overhang misannealing data for Python☆13May 15, 2025Updated 11 months ago
- Read DNA sequences from colourful Microsoft Word documents☆34May 12, 2025Updated 11 months ago
- A generative adversarial network-based model to generate synthetic RNA sequences to target proteins☆11Sep 2, 2025Updated 8 months ago
- Centroid RNA package☆20Oct 12, 2020Updated 5 years ago
- Easily download genomes and build BLAST/Bowtie indexes in Python☆22Sep 30, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆14Jan 18, 2024Updated 2 years ago
- RNN-based Codon Optimization Tool. Publication: https://doi.org/10.1186/s12859-023-05246-8☆71Apr 10, 2023Updated 3 years ago
- Linear-Time Approximation of RNA Folding Partition Function and Base Pairing Probabilities☆35May 24, 2024Updated last year
- Short overhangs design for DNA assembly☆15Jun 8, 2022Updated 3 years ago
- Eterna100-V2 benchmarking results and scripts☆13Oct 21, 2025Updated 6 months ago
- ☆14Oct 14, 2020Updated 5 years ago
- 🎨 Python library to plot multi-part genetic constructs☆26Apr 9, 2025Updated last year
- Robust RNA structure refinement by a nucleobase-centric sampling algorithm coupled with a backbone rotameric and quantum-mechanical-energ…☆20Apr 3, 2021Updated 5 years ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆49Mar 23, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- iFISH Probe Design: a Python3 package to build iFISH probes.☆12Mar 11, 2022Updated 4 years ago
- ☆14Dec 10, 2018Updated 7 years ago
- General low-level API☆50Jul 18, 2022Updated 3 years ago
- A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment☆20Nov 12, 2025Updated 5 months ago
- A Python application to find and classify tetrads and quadruplexes in DNA/RNA 3D structures☆19Updated this week
- A versatile DNA sequence optimizer☆269Nov 5, 2025Updated 5 months ago
- Software to estimate oligonucleotide duplexes melting temperature. Includes state-of-the-art monovalent (e.g., Na+) and bivalent (Mg2+) i…☆12Sep 18, 2022Updated 3 years ago
- 🎺 Plot DNA digestion band patterns with Python☆20May 12, 2025Updated 11 months ago
- Modular cloning simulation with the MoClo framework in Python☆12May 3, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- With RNArtist, you construct a collection of RNA structures that can be gathered into RNA families, projects,...☆177Nov 24, 2023Updated 2 years ago
- finding conserved regions in highly diverse genomes☆16Apr 24, 2026Updated last week
- Search text files for DNA sequences and their reverse complements☆13Mar 2, 2017Updated 9 years ago
- Differentiable RNA folding in JAX☆28Mar 25, 2025Updated last year
- All source code of the crispor.org website☆89Updated this week
- Tandem Repeat Annotation Library☆25Mar 30, 2023Updated 3 years ago
- Useful functions for manipulating Multiplex Assay of Variant Effect datasets.☆10Feb 6, 2025Updated last year