JacobBumgarner / VesselVioLinks
An open-source application for the analysis and visualization of segmented vasculature datasets
☆128Updated last year
Alternatives and similar repositories for VesselVio
Users that are interested in VesselVio are comparing it to the libraries listed below
Sorting:
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning☆76Updated 4 years ago
- 🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes☆53Updated last year
- nnInteractive plugin for Napari - nnInteractive is a framework for 3D interactive segmentation, supporting intuitive prompts like points,…☆104Updated 3 months ago
- A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing vasculature (or blood vessels…☆50Updated 2 years ago
- An ITK Python interface to elastix, a toolbox for rigid and nonrigid registration of images☆261Updated last month
- Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)☆187Updated 2 weeks ago
- Multi-modal Image Registration And Connectivity anaLysis☆48Updated 2 weeks ago
- Implementation of the DeepVesselNet deep learning network☆155Updated 2 years ago
- Utilities for reading and writing files created by 3D Slicer☆42Updated last year
- This project contains command line tools to perform rigid, affine and non-linear registration of nifti or analyse images as well as utili…☆176Updated 2 months ago
- TubeTK is an open-source toolkit for the segmentation, registration, and analysis of tubes and surfaces in images, developed by Kitware, …☆55Updated 2 months ago
- Adaptive Riemannian Optimization for Multi-Scale Diffeomorphic Registration☆73Updated this week
- Very fast greedy diffeomorphic registration code☆83Updated last month
- A 3D Slicer extension for efficient segmentation with nnInteractive.☆126Updated last week
- ☆89Updated last year
- Model Zoo for parameter settings in Elastix, ITKElastix and SimpleElastix☆57Updated last month
- C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.☆57Updated 7 months ago
- An abundance of augmentation layers☆17Updated last month
- ☆94Updated 7 months ago
- Region- and voxel-based probabilistic mapping of whole-brain veins and arteries (densities and diameter) in the MNI space☆50Updated 3 years ago
- NiftyMIC is a research-focused toolkit for motion correction and volumetric image reconstruction of 2D ultra-fast MRI.☆160Updated 3 years ago
- Convert 3D NIfTI images (and other formats supported by ITK) to DICOM 2D series☆89Updated 9 years ago
- ☆30Updated last year
- An image analysis workflow for open and reproducible research on femoral knee cartilage☆33Updated last year
- Python module for processing dynamic contrast enhanced magnetic resonance imaging (DCE-MRI) data☆32Updated 3 years ago
- This extension makes available Elastix medical image registration toolkit (http://elastix.isi.uu.nl/) available in Slicer.☆56Updated 5 months ago
- RadQy is a quality assurance and checking tool for quantitative assessment of magnetic resonance imaging (MRI) and computed tomography (C…☆109Updated 5 months ago
- Software for automatic segmentation and generation of standardized clinical reports of brain tumors from MRI volumes☆43Updated 2 weeks ago
- An extension of 3D Slicer using the Segment Anything Model (SAM) to aid the segmentation of 3D data from tomography or other imaging tech…☆67Updated 6 months ago
- Extension to import microCT data and conduct 3D morphometrics in Slicer☆115Updated last month