π¬π₯ Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes
β53Jun 6, 2024Updated last year
Alternatives and similar repositories for VesselExpress
Users that are interested in VesselExpress are comparing it to the libraries listed below
Sorting:
- A high-performance deep-learning-based pipeline for whole-brain vasculature segmentation at the capillary resolutionβ15Apr 29, 2024Updated last year
- A pipeline to extract vessels from MR images and perform analysis. Code to my TPAMI paper "Tracking the adaptation and compensation proceβ¦β29Jan 11, 2022Updated 4 years ago
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learningβ76Aug 23, 2021Updated 4 years ago
- Python Vascular Network Analysisβ26Updated this week
- TubeTK is an open-source toolkit for the segmentation, registration, and analysis of tubes and surfaces in images, developed by Kitware, β¦β55Nov 16, 2025Updated 3 months ago
- An open-source application for the analysis and visualization of segmented vasculature datasetsβ129May 18, 2024Updated last year
- Code and dataset for the MICCAI 2020 paper: Automated Intracranial Artery Labeling using a Graph Neural Network and Hierarchical Refinemeβ¦β29Aug 6, 2022Updated 3 years ago
- Segmentation of blood vessel from CTA scan using bone subtraction and an iterative thresholding seeking algorithmβ12Apr 9, 2021Updated 4 years ago
- Init with augmentation lossβ19Feb 7, 2023Updated 3 years ago
- Implementation of the DeepVesselNet deep learning networkβ156Jul 7, 2023Updated 2 years ago
- A library for coronary artery reconstruction from angriography, OCT + angiography, (specifically for CFD usage) statistical shape modelliβ¦β17Mar 10, 2025Updated 11 months ago
- β15Jul 14, 2021Updated 4 years ago
- β30Mar 26, 2024Updated last year
- Package to compute the evaluation metrics for MICCAI TopCoW2024 challengeβ16Sep 24, 2024Updated last year
- A software to edit, model and mesh vascular networks from centerlines.β31Feb 28, 2024Updated 2 years ago
- β16Jul 20, 2021Updated 4 years ago
- Source code for CVPR 19 (Divergence Prior) & 21 (Confluent Vessel Tree) papers.β31Jul 19, 2021Updated 4 years ago
- The code in this repository is from my master thesis. This project aims to automatically segment carotid from 3D MR brain image, and use β¦β29May 21, 2021Updated 4 years ago
- Transfer Learning for Stenosis Detection in X-ray Coronary Angiographyβ13Jul 3, 2021Updated 4 years ago
- ClearMap 2 with WobblyStitcher, TubeMap and CellMapβ139Feb 9, 2026Updated 2 weeks ago
- Repository for vLume releases and changesβ10Oct 12, 2020Updated 5 years ago
- Official imagej plugin of the "SACD" -v1.1.3β12Feb 8, 2024Updated 2 years ago
- Research Paper - Automated Labelling of Coronary Vessels via Neural Networkβ10Oct 12, 2020Updated 5 years ago
- β14Oct 29, 2024Updated last year
- β11May 20, 2022Updated 3 years ago
- β10Jun 2, 2023Updated 2 years ago
- [IEEE-TMI'23] TaG-Net: Topology-aware Graph Network for Centerline-based Vessel Labelingβ43Jan 9, 2024Updated 2 years ago
- Structure-Aware Image Segmentation with Homotopy Warpingβ12Sep 19, 2023Updated 2 years ago
- β15May 8, 2025Updated 9 months ago
- A curve skeletonization method for elongated objects that may be noisy, IEEE WACV paper, Aug. 2018 update.β11Apr 15, 2024Updated last year
- Vascular Tree Synthesis Software. You will need CMake and ITK to run VascuSynth. Read the paper in the Insight Journal for instructionsβ¦β12Jan 24, 2018Updated 8 years ago
- Convert .ims to .tifβ14Jul 15, 2021Updated 4 years ago
- [MedIA'22] Generative myocardial motion tracking via latent space exploration with biomechanics-informed priorβ11Apr 3, 2024Updated last year
- Neural Transmitted Radiance Fieldsβ12Apr 11, 2024Updated last year
- A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing vasculature (or blood vesselsβ¦β50Dec 19, 2023Updated 2 years ago
- Official implementation of geometric algebra transformers for large biomedical surface and volume meshes (LaB-GATr)β33Dec 3, 2025Updated 2 months ago
- β12Nov 16, 2020Updated 5 years ago
- Open-source volumetric brain vasculature dataset β 12 two-photon microscopy stacks with dense voxel-level segmentation labelsβ16Feb 16, 2026Updated last week
- code for Marginal loss and exclusion loss for partially supervised multi-organ segmentationβ26Jan 23, 2022Updated 4 years ago