π¬π₯ Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes
β55Jun 6, 2024Updated 2 years ago
Alternatives and similar repositories for VesselExpress
Users that are interested in VesselExpress are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A high-performance deep-learning-based pipeline for whole-brain vasculature segmentation at the capillary resolutionβ15Apr 29, 2024Updated 2 years ago
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learningβ77Aug 23, 2021Updated 4 years ago
- A pipeline to extract vessels from MR images and perform analysis. Code to my TPAMI paper "Tracking the adaptation and compensation proceβ¦β29Jan 11, 2022Updated 4 years ago
- An open-source application for the analysis and visualization of segmented vasculature datasetsβ134May 18, 2024Updated 2 years ago
- A library for coronary artery reconstruction from angriography, OCT + angiography, (specifically for CFD usage) statistical shape modelliβ¦β17Mar 10, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer β’ AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Code and dataset for the MICCAI 2020 paper: Automated Intracranial Artery Labeling using a Graph Neural Network and Hierarchical Refinemeβ¦β29Aug 6, 2022Updated 3 years ago
- Python Vascular Network Analysisβ27Feb 25, 2026Updated 4 months ago
- TubeTK is an open-source toolkit for the segmentation, registration, and analysis of tubes and surfaces in images, developed by Kitware, β¦β57Apr 23, 2026Updated 2 months ago
- Convert .ims to .tifβ14Jul 15, 2021Updated 4 years ago
- Implementation of the DeepVesselNet deep learning networkβ155Jul 7, 2023Updated 2 years ago
- ClearMap 2 with WobblyStitcher, TubeMap and CellMapβ142Jun 22, 2026Updated last week
- Official imagej plugin of the "SACD" -v1.1.3β12Feb 8, 2024Updated 2 years ago
- β30Mar 26, 2024Updated 2 years ago
- Init with augmentation lossβ19Feb 7, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A collection of tools for pre-processing, simulating, and post-processing vascular morphologies.β18Mar 25, 2025Updated last year
- A software to edit, model and mesh vascular networks from centerlines.β33Feb 28, 2024Updated 2 years ago
- This is an official implementation of the MICCAI2024 paper "Self-supervised 3D Skeleton Completion for Vascular Structures".β17Jun 10, 2025Updated last year
- Segmentation of blood vessel from CTA scan using bone subtraction and an iterative thresholding seeking algorithmβ12Apr 9, 2021Updated 5 years ago
- A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing vasculature (or blood vesselsβ¦β49Dec 19, 2023Updated 2 years ago
- Research Paper - Automated Labelling of Coronary Vessels via Neural Networkβ10Oct 12, 2020Updated 5 years ago
- Vascular Tree Synthesis Software. You will need CMake and ITK to run VascuSynth. Read the paper in the Insight Journal for instructionsβ¦β12Jan 24, 2018Updated 8 years ago
- Open-source volumetric brain vasculature dataset β 12 two-photon microscopy stacks with dense voxel-level segmentation labelsβ17Feb 16, 2026Updated 4 months ago
- Package to compute the evaluation metrics for MICCAI TopCoW2024 challengeβ17Sep 24, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer β’ AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- β13Mar 26, 2025Updated last year
- The liver, tumor and vessels segmentation is achieved in this application using semi-automatic segmentation method. It uses DICOM data ofβ¦β10Jul 31, 2020Updated 5 years ago
- β16Jul 20, 2021Updated 4 years ago
- A curve skeletonization method for elongated objects that may be noisy, IEEE WACV paper, Aug. 2018 update.β11Apr 15, 2024Updated 2 years ago
- β33Jul 31, 2025Updated 11 months ago
- [IEEE-TMI'23] TaG-Net: Topology-aware Graph Network for Centerline-based Vessel Labelingβ45May 9, 2026Updated last month
- β16Jul 14, 2021Updated 4 years ago
- Repository for vLume releases and changesβ11Oct 12, 2020Updated 5 years ago
- Source code for CVPR 19 (Divergence Prior) & 21 (Confluent Vessel Tree) papers.β31Jul 19, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer β’ AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- The code in this repository is from my master thesis. This project aims to automatically segment carotid from 3D MR brain image, and use β¦β29May 21, 2021Updated 5 years ago
- Official implementation of geometric algebra transformers for large biomedical surface and volume meshes (LaB-GATr)β36Dec 3, 2025Updated 6 months ago
- VAN-GAN: Vessel Segmentation Generative Adversarial Network. A tool to segment 3D vascular networks without paired training data.β22Jan 7, 2026Updated 5 months ago
- Supporting data for the study "Reconstruction and structured meshing of coronary arteries from X-ray angiography"β27Apr 14, 2021Updated 5 years ago
- code for Marginal loss and exclusion loss for partially supervised multi-organ segmentationβ27Jan 23, 2022Updated 4 years ago
- A C++ solver for blood flow and pressure in deformable 1D hemodynamic networksβ21Mar 13, 2026Updated 3 months ago
- β18Dec 26, 2022Updated 3 years ago