π¬π₯ Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes
β54Jun 6, 2024Updated last year
Alternatives and similar repositories for VesselExpress
Users that are interested in VesselExpress are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A high-performance deep-learning-based pipeline for whole-brain vasculature segmentation at the capillary resolutionβ15Apr 29, 2024Updated 2 years ago
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learningβ76Aug 23, 2021Updated 4 years ago
- A pipeline to extract vessels from MR images and perform analysis. Code to my TPAMI paper "Tracking the adaptation and compensation proceβ¦β29Jan 11, 2022Updated 4 years ago
- An open-source application for the analysis and visualization of segmented vasculature datasetsβ132May 18, 2024Updated last year
- A library for coronary artery reconstruction from angriography, OCT + angiography, (specifically for CFD usage) statistical shape modelliβ¦β17Mar 10, 2025Updated last year
- Virtual machines for every use case on DigitalOcean β’ AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Code and dataset for the MICCAI 2020 paper: Automated Intracranial Artery Labeling using a Graph Neural Network and Hierarchical Refinemeβ¦β29Aug 6, 2022Updated 3 years ago
- Python Vascular Network Analysisβ27Feb 25, 2026Updated 2 months ago
- TubeTK is an open-source toolkit for the segmentation, registration, and analysis of tubes and surfaces in images, developed by Kitware, β¦β55Apr 23, 2026Updated last week
- Convert .ims to .tifβ14Jul 15, 2021Updated 4 years ago
- Implementation of the DeepVesselNet deep learning networkβ155Jul 7, 2023Updated 2 years ago
- ClearMap 2 with WobblyStitcher, TubeMap and CellMapβ140Apr 23, 2026Updated last week
- Official imagej plugin of the "SACD" -v1.1.3β12Feb 8, 2024Updated 2 years ago
- A software to edit, model and mesh vascular networks from centerlines.β32Feb 28, 2024Updated 2 years ago
- β30Mar 26, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean β’ AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A collection of tools for pre-processing, simulating, and post-processing vascular morphologies.β18Mar 25, 2025Updated last year
- β14Oct 29, 2024Updated last year
- This is an official implementation of the MICCAI2024 paper "Self-supervised 3D Skeleton Completion for Vascular Structures".β18Jun 10, 2025Updated 10 months ago
- Segmentation of blood vessel from CTA scan using bone subtraction and an iterative thresholding seeking algorithmβ12Apr 9, 2021Updated 5 years ago
- 3D Graph-Connectivity Constrained Network for Hepatic Vessel Segmentationβ22Jul 26, 2023Updated 2 years ago
- Research Paper - Automated Labelling of Coronary Vessels via Neural Networkβ10Oct 12, 2020Updated 5 years ago
- Vascular Tree Synthesis Software. You will need CMake and ITK to run VascuSynth. Read the paper in the Insight Journal for instructionsβ¦β12Jan 24, 2018Updated 8 years ago
- Open-source volumetric brain vasculature dataset β 12 two-photon microscopy stacks with dense voxel-level segmentation labelsβ17Feb 16, 2026Updated 2 months ago
- β13Mar 26, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer β’ AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Package to compute the evaluation metrics for MICCAI TopCoW2024 challengeβ16Sep 24, 2024Updated last year
- The liver, tumor and vessels segmentation is achieved in this application using semi-automatic segmentation method. It uses DICOM data ofβ¦β10Jul 31, 2020Updated 5 years ago
- β16Jul 20, 2021Updated 4 years ago
- A curve skeletonization method for elongated objects that may be noisy, IEEE WACV paper, Aug. 2018 update.β11Apr 15, 2024Updated 2 years ago
- β33Jul 31, 2025Updated 9 months ago
- [IEEE-TMI'23] TaG-Net: Topology-aware Graph Network for Centerline-based Vessel Labelingβ45Jan 9, 2024Updated 2 years ago
- β15Jul 14, 2021Updated 4 years ago
- Repository for vLume releases and changesβ11Oct 12, 2020Updated 5 years ago
- Source code for CVPR 19 (Divergence Prior) & 21 (Confluent Vessel Tree) papers.β31Jul 19, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient β’ AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- The code in this repository is from my master thesis. This project aims to automatically segment carotid from 3D MR brain image, and use β¦β29May 21, 2021Updated 4 years ago
- Official implementation of geometric algebra transformers for large biomedical surface and volume meshes (LaB-GATr)β36Dec 3, 2025Updated 4 months ago
- VAN-GAN: Vessel Segmentation Generative Adversarial Network. A tool to segment 3D vascular networks without paired training data.β22Jan 7, 2026Updated 3 months ago
- Supporting data for the study "Reconstruction and structured meshing of coronary arteries from X-ray angiography"β26Apr 14, 2021Updated 5 years ago
- code for Marginal loss and exclusion loss for partially supervised multi-organ segmentationβ27Jan 23, 2022Updated 4 years ago
- A C++ solver for blood flow and pressure in deformable 1D hemodynamic networksβ21Mar 13, 2026Updated last month
- β18Dec 26, 2022Updated 3 years ago