RUB-Bioinf / VesselExpressLinks
π¬π₯ Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes
β53Updated last year
Alternatives and similar repositories for VesselExpress
Users that are interested in VesselExpress are comparing it to the libraries listed below
Sorting:
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learningβ76Updated 4 years ago
- β30Updated last year
- An open-source application for the analysis and visualization of segmented vasculature datasetsβ128Updated last year
- nnInteractive plugin for Napari - nnInteractive is a framework for 3D interactive segmentation, supporting intuitive prompts like points,β¦β106Updated 4 months ago
- Python Vascular Network Analysisβ26Updated 6 months ago
- TubeTK is an open-source toolkit for the segmentation, registration, and analysis of tubes and surfaces in images, developed by Kitware, β¦β55Updated 2 months ago
- Implementation of the DeepVesselNet deep learning networkβ156Updated 2 years ago
- An ITK Python interface to elastix, a toolbox for rigid and nonrigid registration of imagesβ262Updated last week
- Very fast greedy diffeomorphic registration codeβ83Updated last month
- β95Updated 8 months ago
- [ICCV 2021] Generative Adversarial Registration for Improved Conditional Deformable Templatesβ50Updated 3 years ago
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Instβ¦β71Updated 3 years ago
- This project contains command line tools to perform rigid, affine and non-linear registration of nifti or analyse images as well as utiliβ¦β176Updated 2 months ago
- Repository for Vesselness algorithmsβ51Updated 3 months ago
- Multi-modal Image Registration And Connectivity anaLysisβ48Updated 3 weeks ago
- panoptica -- instance-wise evaluation of 3D semantic and instance segmentation mapsβ29Updated 4 months ago
- A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing vasculature (or blood vesselsβ¦β50Updated 2 years ago
- A library for performing image registration using deep learning, regularized by inverse consistencyβ57Updated 3 months ago
- An extension of 3D Slicer using the Segment Anything Model (SAM) to aid the segmentation of 3D data from tomography or other imaging techβ¦β67Updated 6 months ago
- [IEEE-TMI'23] TaG-Net: Topology-aware Graph Network for Centerline-based Vessel Labelingβ43Updated 2 years ago
- Image analysis approaches to analyze the OAI magnetic resonance imagesβ27Updated last year
- NiftyMIC is a research-focused toolkit for motion correction and volumetric image reconstruction of 2D ultra-fast MRI.β160Updated 3 years ago
- Model Zoo for parameter settings in Elastix, ITKElastix and SimpleElastixβ57Updated 2 months ago
- Adaptive Riemannian Optimization for Multi-Scale Diffeomorphic Registrationβ85Updated this week
- Neuroimaging in PyTorchβ100Updated 2 weeks ago
- A pipeline to extract vessels from MR images and perform analysis. Code to my TPAMI paper "Tracking the adaptation and compensation proceβ¦β29Updated 4 years ago
- AI-enabled Mouse Organ Segmentationβ14Updated 5 years ago
- GPU and CPU implementation of LDDMM image registrationβ63Updated last week
- PyTorch Connectomics: segmentation toolbox for EM connectomicsβ188Updated this week
- NumPy and Tensorflow implementation of the Multidimensional Contrast Limited Adaptive Histogram Equalization (MCLAHE) procedureβ49Updated 3 years ago