RUB-Bioinf / VesselExpressLinks
π¬π₯ Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes
β52Updated last year
Alternatives and similar repositories for VesselExpress
Users that are interested in VesselExpress are comparing it to the libraries listed below
Sorting:
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learningβ74Updated 4 years ago
- β102Updated 2 months ago
- An open-source application for the analysis and visualization of segmented vasculature datasetsβ125Updated last year
- β29Updated last year
- Python Vascular Network Analysisβ26Updated 4 months ago
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Instβ¦β71Updated 3 years ago
- TubeTK is an open-source toolkit for the segmentation, registration, and analysis of tubes and surfaces in images, developed by Kitware, β¦β54Updated 3 weeks ago
- Multi-modal Image Registration And Connectivity anaLysisβ46Updated this week
- Very fast greedy diffeomorphic registration codeβ82Updated 6 months ago
- Implementation of the DeepVesselNet deep learning networkβ153Updated 2 years ago
- An ITK Python interface to elastix, a toolbox for rigid and nonrigid registration of imagesβ258Updated 2 months ago
- A 3D Slicer extension for efficient segmentation with nnInteractive.β118Updated 3 weeks ago
- Repository for Vesselness algorithmsβ49Updated last month
- Model Zoo for parameter settings in Elastix, ITKElastix and SimpleElastixβ55Updated last week
- β92Updated 6 months ago
- Adaptive Riemannian Optimization for Multi-Scale Diffeomorphic Registrationβ71Updated last month
- A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing vasculature (or blood vesselsβ¦β49Updated last year
- Python scripts to read and write the CREMI hdf5 file format.β39Updated 2 years ago
- Image analysis approaches to analyze the OAI magnetic resonance imagesβ27Updated 11 months ago
- Easy Volumetric Segmentation with Deep Learningβ28Updated 3 weeks ago
- GPU and CPU implementation of LDDMM image registrationβ62Updated last year
- [ICCV 2021] Generative Adversarial Registration for Improved Conditional Deformable Templatesβ50Updated 2 years ago
- A library for performing image registration using deep learning, regularized by inverse consistencyβ56Updated last month
- This project contains command line tools to perform rigid, affine and non-linear registration of nifti or analyse images as well as utiliβ¦β172Updated 2 weeks ago
- panoptica -- instance-wise evaluation of 3D semantic and instance segmentation mapsβ27Updated 2 months ago
- [IEEE-TMI'23] TaG-Net: Topology-aware Graph Network for Centerline-based Vessel Labelingβ42Updated last year
- β35Updated 6 years ago
- VAN-GAN: Vessel Segmentation Generative Adversarial Network. A tool to segment 3D vascular networks without paired training data.β22Updated this week
- Script that registers Histology slices to volumetric image dataβ11Updated 2 years ago
- AI-enabled Mouse Organ Segmentationβ14Updated 4 years ago