RUB-Bioinf / VesselExpressLinks
π¬π₯ Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes
β51Updated last year
Alternatives and similar repositories for VesselExpress
Users that are interested in VesselExpress are comparing it to the libraries listed below
Sorting:
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learningβ74Updated 4 years ago
- β93Updated last month
- An open-source application for the analysis and visualization of segmented vasculature datasetsβ121Updated last year
- β29Updated last year
- TubeTK is an open-source toolkit for the segmentation, registration, and analysis of tubes and surfaces in images, developed by Kitware, β¦β54Updated 5 months ago
- This project contains command line tools to perform rigid, affine and non-linear registration of nifti or analyse images as well as utiliβ¦β165Updated 3 months ago
- Very fast greedy diffeomorphic registration codeβ81Updated 4 months ago
- Adaptive Riemannian Optimization for Multi-Scale Diffeomorphic Registrationβ52Updated last week
- Implementation of the DeepVesselNet deep learning networkβ151Updated 2 years ago
- Python Vascular Network Analysisβ26Updated last month
- An ITK Python interface to elastix, a toolbox for rigid and nonrigid registration of imagesβ252Updated this week
- Multi-modal Image Registration And Connectivity anaLysisβ45Updated last week
- Model Zoo for parameter settings in Elastix, ITKElastix and SimpleElastixβ51Updated 6 months ago
- Repository for Vesselness algorithmsβ47Updated last year
- Software for automatic segmentation and generation of standardized clinical reports of brain tumors from MRI volumesβ43Updated 2 months ago
- [ICCV 2021] Generative Adversarial Registration for Improved Conditional Deformable Templatesβ51Updated 2 years ago
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Instβ¦β70Updated 2 years ago
- panoptica -- instance-wise evaluation of 3D semantic and instance segmentation mapsβ26Updated this week
- A 3D Slicer extension for efficient segmentation with nnInteractive.β91Updated 3 weeks ago
- A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing vasculature (or blood vesselsβ¦β48Updated last year
- A library for performing image registration using deep learning, regularized by inverse consistencyβ55Updated last month
- NiftyMIC is a research-focused toolkit for motion correction and volumetric image reconstruction of 2D ultra-fast MRI.β152Updated 3 years ago
- β90Updated 3 months ago
- uniGradICON: A Foundation Model for Medical Image Registration (MICCAI 2024)β167Updated this week
- β34Updated 6 years ago
- Neuroimaging in PyTorchβ98Updated last month
- GPU and CPU implementation of LDDMM image registrationβ59Updated 9 months ago
- [IEEE-TMI'23] TaG-Net: Topology-aware Graph Network for Centerline-based Vessel Labelingβ41Updated last year
- A pipeline to extract vessels from MR images and perform analysis. Code to my TPAMI paper "Tracking the adaptation and compensation proceβ¦β29Updated 3 years ago
- Brain CT image segmentation, normalisation, skull-stripping and total brain/intracranial volume computation.β78Updated last year