RUB-Bioinf / VesselExpressLinks
π¬π₯ Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes
β53Updated last year
Alternatives and similar repositories for VesselExpress
Users that are interested in VesselExpress are comparing it to the libraries listed below
Sorting:
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learningβ74Updated 4 years ago
- nnInteractive plugin for Napari - nnInteractive is a framework for 3D interactive segmentation, supporting intuitive prompts like points,β¦β103Updated 2 months ago
- An open-source application for the analysis and visualization of segmented vasculature datasetsβ126Updated last year
- β30Updated last year
- Python Vascular Network Analysisβ26Updated 5 months ago
- TubeTK is an open-source toolkit for the segmentation, registration, and analysis of tubes and surfaces in images, developed by Kitware, β¦β54Updated last month
- Implementation of the DeepVesselNet deep learning networkβ152Updated 2 years ago
- β92Updated 6 months ago
- Model Zoo for parameter settings in Elastix, ITKElastix and SimpleElastixβ55Updated 3 weeks ago
- Very fast greedy diffeomorphic registration codeβ82Updated this week
- Repository for Vesselness algorithmsβ50Updated 2 months ago
- A library for performing image registration using deep learning, regularized by inverse consistencyβ57Updated last month
- An ITK Python interface to elastix, a toolbox for rigid and nonrigid registration of imagesβ260Updated last week
- This project contains command line tools to perform rigid, affine and non-linear registration of nifti or analyse images as well as utiliβ¦β173Updated last month
- Adaptive Riemannian Optimization for Multi-Scale Diffeomorphic Registrationβ72Updated 2 months ago
- A 3D Slicer extension for efficient segmentation with nnInteractive.β121Updated 2 weeks ago
- Baseline methods, training scripts, and pretrained models for LUMIR challenge at Learn2Reg 2024β31Updated 6 months ago
- [NeurIPS 2024] Deep Learning in Medical Image Registration: Magic or Mirage?β17Updated last year
- β29Updated 3 months ago
- An abundance of augmentation layersβ17Updated 3 weeks ago
- uniGradICON: A Foundation Model for Medical Image Registration (MICCAI 2024)β199Updated last week
- Multi-modal Image Registration And Connectivity anaLysisβ46Updated last week
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Instβ¦β71Updated 3 years ago
- VAN-GAN: Vessel Segmentation Generative Adversarial Network. A tool to segment 3D vascular networks without paired training data.β21Updated 3 weeks ago
- GPU and CPU implementation of LDDMM image registrationβ63Updated last year
- A high-performance deep-learning-based pipeline for whole-brain vasculature segmentation at the capillary resolutionβ15Updated last year
- Computes vesselness scores for 3-dimensional images.β73Updated 8 years ago
- A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing vasculature (or blood vesselsβ¦β50Updated 2 years ago
- [IEEE-TMI'23] TaG-Net: Topology-aware Graph Network for Centerline-based Vessel Labelingβ42Updated last year
- [ICCV 2021] Generative Adversarial Registration for Improved Conditional Deformable Templatesβ50Updated 2 years ago