🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes
☆56Jun 6, 2024Updated 2 years ago
Alternatives and similar repositories for VesselExpress
Users that are interested in VesselExpress are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A high-performance deep-learning-based pipeline for whole-brain vasculature segmentation at the capillary resolution☆16Apr 29, 2024Updated 2 years ago
- A pipeline to extract vessels from MR images and perform analysis. Code to my TPAMI paper "Tracking the adaptation and compensation proce…☆29Jan 11, 2022Updated 4 years ago
- ☆18May 16, 2024Updated 2 years ago
- An open-source application for the analysis and visualization of segmented vasculature datasets☆140May 18, 2024Updated 2 years ago
- A library for coronary artery reconstruction from angriography, OCT + angiography, (specifically for CFD usage) statistical shape modelli…☆17Mar 10, 2025Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Code and dataset for the MICCAI 2020 paper: Automated Intracranial Artery Labeling using a Graph Neural Network and Hierarchical Refineme…☆30Aug 6, 2022Updated 4 years ago
- Python Vascular Network Analysis☆28Aug 2, 2026Updated 2 months ago
- TubeTK is an open-source toolkit for the segmentation, registration, and analysis of tubes and surfaces in images, developed by Kitware, …☆58Apr 23, 2026Updated 5 months ago
- Convert .ims to .tif☆15Jul 15, 2021Updated 5 years ago
- Implementation of the DeepVesselNet deep learning network☆156Jul 7, 2023Updated 3 years ago
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆147Updated this week
- ☆29Mar 26, 2024Updated 2 years ago
- A software to edit, model and mesh vascular networks from centerlines.☆37Feb 28, 2024Updated 2 years ago
- Init with augmentation loss☆19Feb 7, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆16Jul 14, 2021Updated 5 years ago
- Official imagej plugin of the "SACD" -v1.1.3☆12Feb 8, 2024Updated 2 years ago
- Segmentation of blood vessel from CTA scan using bone subtraction and an iterative thresholding seeking algorithm☆12Apr 9, 2021Updated 5 years ago
- Package to compute the evaluation metrics for MICCAI TopCoW2024 challenge☆19Sep 24, 2024Updated 2 years ago
- 3D Graph-Connectivity Constrained Network for Hepatic Vessel Segmentation☆22Jul 26, 2023Updated 3 years ago
- This is an official implementation of the MICCAI2024 paper "Self-supervised 3D Skeleton Completion for Vascular Structures".☆17Jun 10, 2025Updated last year
- A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing vasculature (or blood vessels…☆50Dec 19, 2023Updated 2 years ago
- Research Paper - Automated Labelling of Coronary Vessels via Neural Network☆10Oct 12, 2020Updated 5 years ago
- Vascular Tree Synthesis Software. You will need CMake and ITK to run VascuSynth. Read the paper in the Insight Journal for instructions…☆12Jan 24, 2018Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A collection of tools for pre-processing, simulating, and post-processing vascular morphologies.☆20Mar 25, 2025Updated last year
- The liver, tumor and vessels segmentation is achieved in this application using semi-automatic segmentation method. It uses DICOM data of…☆10Jul 31, 2020Updated 6 years ago
- ☆16Jul 20, 2021Updated 5 years ago
- ☆13Mar 26, 2025Updated last year
- A curve skeletonization method for elongated objects that may be noisy, IEEE WACV paper, Aug. 2018 update.☆11Apr 15, 2024Updated 2 years ago
- Source code for CVPR 19 (Divergence Prior) & 21 (Confluent Vessel Tree) papers.☆31Jul 19, 2021Updated 5 years ago
- Repository for vLume releases and changes☆11Oct 12, 2020Updated 5 years ago
- The code in this repository is from my master thesis. This project aims to automatically segment carotid from 3D MR brain image, and use …☆29May 21, 2021Updated 5 years ago
- Official implementation of geometric algebra transformers for large biomedical surface and volume meshes (LaB-GATr)☆38Dec 3, 2025Updated 10 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- [IEEE-TMI'23] TaG-Net: Topology-aware Graph Network for Centerline-based Vessel Labeling☆49May 9, 2026Updated 5 months ago
- ☆32Jul 31, 2025Updated last year
- Supporting data for the study "Reconstruction and structured meshing of coronary arteries from X-ray angiography"☆27Apr 14, 2021Updated 5 years ago
- VAN-GAN: Vessel Segmentation Generative Adversarial Network. A tool to segment 3D vascular networks without paired training data.☆22Jan 7, 2026Updated 9 months ago
- ☆17May 8, 2025Updated last year
- code for Marginal loss and exclusion loss for partially supervised multi-organ segmentation☆29Jan 23, 2022Updated 4 years ago
- ☆17Sep 24, 2026Updated 2 weeks ago