π¬π₯ Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes
β53Jun 6, 2024Updated last year
Alternatives and similar repositories for VesselExpress
Users that are interested in VesselExpress are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A high-performance deep-learning-based pipeline for whole-brain vasculature segmentation at the capillary resolutionβ15Apr 29, 2024Updated last year
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learningβ76Aug 23, 2021Updated 4 years ago
- A pipeline to extract vessels from MR images and perform analysis. Code to my TPAMI paper "Tracking the adaptation and compensation proceβ¦β29Jan 11, 2022Updated 4 years ago
- An open-source application for the analysis and visualization of segmented vasculature datasetsβ131May 18, 2024Updated last year
- A library for coronary artery reconstruction from angriography, OCT + angiography, (specifically for CFD usage) statistical shape modelliβ¦β17Mar 10, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Code and dataset for the MICCAI 2020 paper: Automated Intracranial Artery Labeling using a Graph Neural Network and Hierarchical Refinemeβ¦β29Aug 6, 2022Updated 3 years ago
- Python Vascular Network Analysisβ27Feb 25, 2026Updated last month
- TubeTK is an open-source toolkit for the segmentation, registration, and analysis of tubes and surfaces in images, developed by Kitware, β¦β55Apr 3, 2026Updated last week
- Convert .ims to .tifβ14Jul 15, 2021Updated 4 years ago
- Implementation of the DeepVesselNet deep learning networkβ155Jul 7, 2023Updated 2 years ago
- Official imagej plugin of the "SACD" -v1.1.3β12Feb 8, 2024Updated 2 years ago
- ClearMap 2 with WobblyStitcher, TubeMap and CellMapβ140Apr 3, 2026Updated last week
- A software to edit, model and mesh vascular networks from centerlines.β32Feb 28, 2024Updated 2 years ago
- β30Mar 26, 2024Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting β’ AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A collection of tools for pre-processing, simulating, and post-processing vascular morphologies.β18Mar 25, 2025Updated last year
- This is an official implementation of the MICCAI2024 paper "Self-supervised 3D Skeleton Completion for Vascular Structures".β18Jun 10, 2025Updated 10 months ago
- Segmentation of blood vessel from CTA scan using bone subtraction and an iterative thresholding seeking algorithmβ12Apr 9, 2021Updated 5 years ago
- 3D Graph-Connectivity Constrained Network for Hepatic Vessel Segmentationβ22Jul 26, 2023Updated 2 years ago
- A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing vasculature (or blood vesselsβ¦β50Dec 19, 2023Updated 2 years ago
- Research Paper - Automated Labelling of Coronary Vessels via Neural Networkβ10Oct 12, 2020Updated 5 years ago
- Vascular Tree Synthesis Software. You will need CMake and ITK to run VascuSynth. Read the paper in the Insight Journal for instructionsβ¦β12Jan 24, 2018Updated 8 years ago
- Open-source volumetric brain vasculature dataset β 12 two-photon microscopy stacks with dense voxel-level segmentation labelsβ17Feb 16, 2026Updated last month
- β13Mar 26, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Package to compute the evaluation metrics for MICCAI TopCoW2024 challengeβ16Sep 24, 2024Updated last year
- β16Jul 20, 2021Updated 4 years ago
- A curve skeletonization method for elongated objects that may be noisy, IEEE WACV paper, Aug. 2018 update.β11Apr 15, 2024Updated last year
- Official implementation of geometric algebra transformers for large biomedical surface and volume meshes (LaB-GATr)β34Dec 3, 2025Updated 4 months ago
- β32Jul 31, 2025Updated 8 months ago
- [IEEE-TMI'23] TaG-Net: Topology-aware Graph Network for Centerline-based Vessel Labelingβ43Jan 9, 2024Updated 2 years ago
- β15Jul 14, 2021Updated 4 years ago
- Repository for vLume releases and changesβ10Oct 12, 2020Updated 5 years ago
- Source code for CVPR 19 (Divergence Prior) & 21 (Confluent Vessel Tree) papers.β31Jul 19, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling on Cloudways β’ AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- The code in this repository is from my master thesis. This project aims to automatically segment carotid from 3D MR brain image, and use β¦β29May 21, 2021Updated 4 years ago
- VAN-GAN: Vessel Segmentation Generative Adversarial Network. A tool to segment 3D vascular networks without paired training data.β22Jan 7, 2026Updated 3 months ago
- Supporting data for the study "Reconstruction and structured meshing of coronary arteries from X-ray angiography"β26Apr 14, 2021Updated 4 years ago
- code for Marginal loss and exclusion loss for partially supervised multi-organ segmentationβ27Jan 23, 2022Updated 4 years ago
- A C++ solver for blood flow and pressure in deformable 1D hemodynamic networksβ21Mar 13, 2026Updated 3 weeks ago
- [MedIA'22] Generative myocardial motion tracking via latent space exploration with biomechanics-informed priorβ12Apr 3, 2024Updated 2 years ago
- Transfer Learning for Stenosis Detection in X-ray Coronary Angiographyβ13Jul 3, 2021Updated 4 years ago