Integrating Ribo-SEQ Upstream and Downstream Analysis
☆12Oct 14, 2024Updated last year
Alternatives and similar repositories for RiboProfiler
Users that are interested in RiboProfiler are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Profile and Heatmap Visualization by Using ggplot2 and grid☆13Nov 21, 2023Updated 2 years ago
- Extract Sequence from Genome According to Annotation File☆40Apr 16, 2025Updated last year
- funny geom/stat functions for visualization☆11Aug 30, 2023Updated 2 years ago
- Creating Circular Graph with the Grammar of GGplot2☆22Jan 5, 2024Updated 2 years ago
- ☆22Dec 13, 2025Updated 6 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Visualizing SingleCell data Using GGplot2☆37Sep 28, 2024Updated last year
- A Package for Ribosome Profiling Data Analysis☆18Jan 17, 2026Updated 5 months ago
- Minimal scripts to reproduce the RADICL-seq analysis of the Nature Communications manuscript☆11Jan 30, 2020Updated 6 years ago
- A copy of RiboTaper v1.2☆10Mar 14, 2021Updated 5 years ago
- SNP and indel calls from multiple sequence alignment (MSA)☆13Nov 11, 2022Updated 3 years ago
- public production version of sequin to share with the public☆11Jun 12, 2026Updated 2 weeks ago
- An integrated computational framework for comprehensive transcriptome analyses with Nanopore direct-RNA sequencing data☆15May 17, 2025Updated last year
- Use batch balanced KNN (BBKNN) in R☆14Sep 9, 2025Updated 9 months ago
- Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq☆14Mar 11, 2026Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- This is the repository which contains the code that was used to generate the results and figures of the “Single-cell RNA-sequencing revea…☆13Apr 14, 2026Updated 2 months ago
- ☆10Jul 10, 2023Updated 2 years ago
- An R package to visualize bigwigs.☆31Jul 5, 2022Updated 3 years ago
- One-step to Cluster and Visualize Gene Expression Matrix☆379Mar 7, 2026Updated 3 months ago
- extract gene TSS site form gencode/ensembl/gencode database GTF file and export bed format file.☆12Jan 24, 2022Updated 4 years ago
- extract gene TSS/TES site form gencode/ensembl/gencode database GTF file and export bed format file.☆11Jan 24, 2022Updated 4 years ago
- A framework around Tensorflow-Keras that makes it easy to train and evaluate any deep learning architecture on imaging flow cytometry dat…☆12Dec 8, 2022Updated 3 years ago
- Genome databases generation pipeline for ngs.plot and region_analysis.☆17Sep 8, 2015Updated 10 years ago
- Useful functions to make your scRNA-seq plot more cool!☆395Apr 18, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ggideogram is a ggplot2 extension package for drawing chromosome diagrams☆18Nov 29, 2024Updated last year
- Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single…☆25Jun 20, 2026Updated last week
- ☆13Sep 8, 2020Updated 5 years ago
- Lineage Tracing by Integrating Mutation and Transcriptomic data☆13Jun 16, 2020Updated 6 years ago
- A tidyverse front-end using a collapse back-end☆24Apr 17, 2026Updated 2 months ago
- Integration ribosome profiling - mass spectrometry☆15Nov 4, 2025Updated 7 months ago
- Python3 command-line and GUI tools for common codon usage statistics given a FASTA of Coding sequences☆13Dec 9, 2025Updated 6 months ago
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆20Jul 13, 2020Updated 5 years ago
- Seqscope codes☆11Nov 28, 2021Updated 4 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Code required to reproduce analysis of the single cell Cut and Tag data in the resource paper (Bartosovic et. al., 2020)☆14Apr 2, 2026Updated 2 months ago
- release version☆59Jul 29, 2022Updated 3 years ago
- A pipeline for the identification of Compound Heterozygous Variants☆10Nov 10, 2022Updated 3 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆70Jun 17, 2026Updated last week
- 用每个窗口的read数作为特征、胎儿浓度作为标签,训练神经网络模型;训练完成的神经网络模型可用于NIPT胎儿浓度的预测☆11Jun 10, 2022Updated 4 years ago
- Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019☆19Jul 5, 2019Updated 6 years ago
- Bayesian-based fetal genotyping using maternal cell-free DNA and parental sequencing data.☆14Jun 5, 2019Updated 7 years ago