lucapinello / bsub_jupyter
Connect to a LSF main node directly or trough a ssh jump node, launch a jupyter notebook via bsub and open automatically a tunnel. The name of the connection can be used to reestablish the connection later or to terminate it.
☆20Updated 3 years ago
Alternatives and similar repositories for bsub_jupyter:
Users that are interested in bsub_jupyter are comparing it to the libraries listed below
- A Jupyter wrapper for the igv.js library (representation of genomic data)☆26Updated 4 years ago
- Python Optimal Leaf Ordering for Hierarchical Clustering☆21Updated 7 years ago
- Partial reimplementation of bcftools for VCF Zarr☆12Updated 2 weeks ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Updated last year
- Build and deploy Singularity containers to GitHub releases, and pull with the singularity-hpc client☆16Updated last year
- requirements, examples, and tests for expression matrix file formats☆22Updated 6 years ago
- A unified array job submitter for LSF, SGE/UGE and Slurm☆32Updated 6 months ago
- ☆16Updated last year
- bioinformatics visualization tools with pyviz/bokeh☆20Updated last year
- A demo and tutorial for how to use git and singularity to make your research more portable and reproducible☆26Updated 8 years ago
- A Snakemake executor plugin for submitting jobs to a SLURM cluster☆31Updated last week
- HPC Python lesson materials☆60Updated 2 years ago
- Misc. utilities☆11Updated 5 years ago
- Proteins as words, genomes as documents.☆20Updated 4 years ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆17Updated 3 years ago
- ☆10Updated 6 years ago
- ☆21Updated last year
- dead Simple Queue - Slurm arrays for files with jobs in them.☆24Updated 2 years ago
- ☆12Updated 8 years ago
- Training material for intermediate R / Bioconductor courses☆17Updated 2 years ago
- Build and maintain multiple custom conda environments all in one place.☆37Updated 4 months ago
- ChIP-seq peak calling with GC effects adjustment☆9Updated 6 years ago
- kvector is a small utility for converting motifs to kmer vectors to compare motifs of different lengths☆10Updated 7 years ago
- This BLENDER has been sunsetted☆16Updated 6 months ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15Updated 5 years ago
- Clonal reconstruction from HTS data☆10Updated 3 years ago
- %conda magic for IPython☆28Updated 8 years ago
- Demonstrating best practices for bioinformatics command line tools☆26Updated 4 years ago
- Stupid Simple Elastic Compute Cloud☆16Updated last year
- ☆12Updated 6 years ago