lucapinello / bsub_jupyterLinks
Connect to a LSF main node directly or trough a ssh jump node, launch a jupyter notebook via bsub and open automatically a tunnel. The name of the connection can be used to reestablish the connection later or to terminate it.
☆20Updated 3 years ago
Alternatives and similar repositories for bsub_jupyter
Users that are interested in bsub_jupyter are comparing it to the libraries listed below
Sorting:
- A Jupyter wrapper for the igv.js library (representation of genomic data)☆26Updated 4 years ago
- A unified array job submitter for LSF, SGE/UGE and Slurm☆32Updated 8 months ago
- Python Optimal Leaf Ordering for Hierarchical Clustering☆21Updated 8 years ago
- bioinformatics visualization tools with pyviz/bokeh☆20Updated last year
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Updated last year
- Proteins as words, genomes as documents.☆20Updated 4 years ago
- ☆21Updated last year
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆17Updated 3 years ago
- A Snakemake executor plugin for submitting jobs to a SLURM cluster☆36Updated this week
- Misc. utilities☆11Updated 6 years ago
- ChIP-seq peak calling with GC effects adjustment☆9Updated 6 years ago
- python wrapper to dpryan79's bigwig library using cffi☆19Updated 9 years ago
- Bam to Pandas DataFrame, quickly☆13Updated last month
- HPC Python lesson materials☆61Updated 2 years ago
- pyranges/bioframe for polars☆18Updated last year
- requirements, examples, and tests for expression matrix file formats☆22Updated 6 years ago
- python wrapper to submit jobs to bsub (and later qsub)☆44Updated 3 years ago
- Cookiecutter profile for making a NextFlow-based bioinformatics tool☆16Updated 11 months ago
- ☆16Updated 5 months ago
- Flexible omics pipeline☆18Updated last month
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- example singularity definition files and demos☆27Updated 7 years ago
- Build and maintain multiple custom conda environments all in one place.☆38Updated 6 months ago
- A Python package for fast operations on 1-dimensional genomic signal tracks☆24Updated 5 years ago
- ☆14Updated 5 years ago
- ☆12Updated 6 years ago
- ☆16Updated last year
- Training material for intermediate R / Bioconductor courses☆17Updated 2 years ago
- High-Performance Computing in Bioinformatics☆21Updated 3 years ago
- ☆10Updated 6 years ago