Alternatives and similar repositories for proteoDA

Users that are interested in proteoDA are comparing it to the libraries listed below

• ComputationalProteomics / NormalyzerDE
  Tools for normalization, evaluation of outliers, technical biases and batch effects and differential expression analysis.
  ☆23Updated 7 months ago
• ftwkoopmans / msdap
  MS-DAP: downstream analysis pipeline for quantitative proteomics
  ☆39Updated 3 months ago
• saezlab / cosmosR
  COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…
  ☆61Updated 2 months ago
• fgcz / prolfqua
  Differential Expression Analysis tool box R lang package for omics data
  ☆45Updated this week
• DavisLaboratory / msImpute
  Methods for label-free mass spectrometry proteomics
  ☆15Updated 2 months ago
• bioinfocz / scdrake
  A pipeline for droplet-based single-cell RNA-seq data secondary analysis implemented in the drake Make-like pipeline toolkit for the R la…
  ☆11Updated 8 months ago
• arnesmits / DEP
  DEP package
  ☆28Updated 2 years ago
• broadinstitute / PANOPLY
  Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…
  ☆37Updated this week
• jeffsocal / tidyproteomics
  An S3 data object and framework for common quantitative proteomic analyses
  ☆41Updated last week
• ByrumLab / proteiNorm
  ☆10Updated last year
• mousepixels / sanbomics
  bioinformatics plotting and tools
  ☆57Updated last year
• HaoGroup-ProtContLib / Protein-Contaminant-Libraries-for-DDA-and-DIA-Proteomics
  This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…
  ☆25Updated 6 months ago
• Proteomicslab57357 / UniprotR
  Retrieving Information of Proteins from Uniprot
  ☆67Updated last year
• saezlab / transcriptutorial
  This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL
  ☆55Updated 2 years ago
• Vitek-Lab / MSstats
  R package - MSstats
  ☆83Updated last week
• singha53-zz / diablo
  DIABLO - an integrative multi-group, multi-dataset classification method
  ☆23Updated 6 years ago
• MannLabs / directlfq
  Fast and accurate label-free quantification for small and very large numbers of proteomes
  ☆56Updated last month
• evocellnet / funscoR
  R package for functionally scoring phosphorylation sites
  ☆19Updated 5 years ago
• kenichi-shimada / shinyDepMap
  A shiny-based web tool for interactive analysis of DepMap data
  ☆23Updated 4 years ago
• pnnl / leapR
  ☆17Updated last week
• Vitek-Lab / MSstatsShiny
  R-Shiny GUI integrated with the MSstats package family
  ☆15Updated 2 weeks ago
• kuwisdelu / Cardinal
  Mass spectrometry imaging toolbox
  ☆58Updated 5 months ago
• bfurtwa / SCeptre
  SCeptre is a python package that extends the functionalities of Scanpy to analyze multiplexed single-cell proteomics data.
  ☆14Updated last year
• MonashBioinformaticsPlatform / LFQ-Analyst
  The repo for LFQ-Analyst
  ☆30Updated 10 months ago
• jessegmeyerlab / proteomics-tutorial
  ☆62Updated last year
• jpquast / protti
  Picotti lab data analysis package.
  ☆63Updated last month
• CCprofiler / CCprofiler
  Analysis of co-fractionation MS datasets
  ☆11Updated 3 years ago
• dnusinow / cRomppass
  Score an Affinity Purification Mass Spectrometry Proteomics Experiment for Interactor Confidence
  ☆10Updated 9 years ago
• vdemichev / diann-rpackage
  Report processing and protein quantification for MS-based proteomics
  ☆46Updated last year
• MonashProteomics / FragPipe-Analyst
  Documentation is available here:
  ☆17Updated last week