greenelab / knowledge-graph-reviewLinks
A literature review for constructing and using knowledge graphs in a biomedical setting.
☆11Updated 5 years ago
Alternatives and similar repositories for knowledge-graph-review
Users that are interested in knowledge-graph-review are comparing it to the libraries listed below
Sorting:
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://gi…☆45Updated 3 years ago
- PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models☆194Updated last year
- ☆70Updated 3 years ago
- Retrieve and process PubTator annotations☆44Updated 2 years ago
- a module to calculate the MeSH similarity☆27Updated 3 years ago
- ☆131Updated 2 years ago
- Hetnets in Python (relocated from dhimmel/hetio)☆99Updated last month
- A combined deep learning tool for automated recognition of human phenotype ontology☆27Updated 2 years ago
- Grounding of biomedical named entities with contextual disambiguation☆44Updated 3 months ago
- A collection of useful python functions for looking up information and working with the Biolink Model☆24Updated 3 weeks ago
- a module to calculate the MeSH similarity☆26Updated 4 years ago
- ☆22Updated 2 years ago
- KGX is a Python library for exchanging Knowledge Graphs☆133Updated 3 weeks ago
- Github repo for the Experimental Factor Ontology (EFO)☆60Updated last week
- ☆24Updated 4 years ago
- Example code and data samples for "An experimentally validated approach to automated biological evidence generation in drug discovery usi…☆12Updated last year
- Turning Ontologies Plus Annotation Properties into Vectors☆35Updated 5 years ago
- Schema and generated objects for biolink data model and upper ontology☆208Updated this week
- Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)☆41Updated last week
- 🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…☆57Updated this week
- 📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures☆73Updated last week
- A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub☆32Updated last year
- Hetionet: an integrative network of disease☆310Updated 2 years ago
- Build PharMeBINet from different sources.☆20Updated this week
- mOWL: Machine Learning library with Ontologies☆78Updated 3 weeks ago
- The symptom ontology was designed around the guiding concept of a symptom being: “A perceived change in function, sensation or appearance…☆42Updated last year
- TypeDB Bio: Biomedical Knowledge Graph☆85Updated 4 months ago
- Ontology cross-reference and mapping service☆19Updated 5 months ago
- A Standard Database for Drug Repositioning☆19Updated 8 years ago
- Knowledge graphs generation from unstructured text.☆71Updated 8 months ago