greenelab / knowledge-graph-reviewLinks
A literature review for constructing and using knowledge graphs in a biomedical setting.
☆11Updated 5 years ago
Alternatives and similar repositories for knowledge-graph-review
Users that are interested in knowledge-graph-review are comparing it to the libraries listed below
Sorting:
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://gi…☆45Updated 2 years ago
- Retrieve and process PubTator annotations☆44Updated last year
- Turning Ontologies Plus Annotation Properties into Vectors☆35Updated 4 years ago
- a module to calculate the MeSH similarity☆26Updated 4 years ago
- a module to calculate the MeSH similarity☆25Updated 3 years ago
- Python library for working with BioC files☆13Updated 7 years ago
- An instance of KG Hub to produce a knowledge graph for COVID-19 response.☆81Updated last year
- ☆22Updated 2 years ago
- ☆41Updated 5 years ago
- Ontology cross-reference and mapping service☆19Updated last month
- Grounding of biomedical named entities with contextual disambiguation☆44Updated 3 weeks ago
- KGX is a Python library for exchanging Knowledge Graphs☆127Updated last week
- ☆67Updated 3 years ago
- 🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…☆54Updated last month
- NetworkX-based Python library for representing ontologies☆90Updated last year
- Ontology Tutorial☆72Updated 2 years ago
- Feature learning over RDF data and OWL ontologies☆45Updated 2 years ago
- ☆24Updated 4 years ago
- A Database-based knowledge back-end built on and for INDRA. The INDRA Database is a service that can be set up by any user with their own…☆17Updated 2 weeks ago
- A collection of useful python functions for looking up information and working with the Biolink Model☆24Updated last week
- A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)☆21Updated 3 years ago
- BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction☆26Updated last year
- ☆16Updated last year
- Bio relation extraction labeled dataset☆45Updated 3 years ago
- mOWL: Machine Learning library with Ontologies☆67Updated 4 months ago
- Tool that converts between BioC XML files and BioC JSON files☆16Updated 8 years ago
- Hetnets in Python (relocated from dhimmel/hetio)☆95Updated last year
- Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)☆35Updated this week
- Github repo for the Experimental Factor Ontology (EFO)☆56Updated 3 weeks ago
- This repository contains the corpora and supplementary data, along with instructions for recreating the experiments, for our paper: "Towa…☆15Updated 5 years ago