tsudalab / TSMDLinks
Tree Search Molecular Dynamics Simulation
☆11Updated 6 years ago
Alternatives and similar repositories for TSMD
Users that are interested in TSMD are comparing it to the libraries listed below
Sorting:
- PyL3dMD: Python LAMMPS 3D Molecular Descriptors Package☆31Updated last year
- A simple yet versatile toolkit to setup quantum mechanical/molecular mechanical (QM/MM) calculations from molecular dynamics trajectories…☆30Updated last year
- Challenge details, inputs, and (eventually) results for the SAMPL8 series of challenges☆25Updated 7 months ago
- scripts for analyzing molecular dynamics trajectories using VMD☆39Updated 10 years ago
- McDock: Simple Monte Carlo docking algorithm in C++☆10Updated 8 years ago
- ☆16Updated 2 months ago
- ☆27Updated 4 years ago
- https://arxiv.org/abs/2102.11439☆21Updated 4 years ago
- Code for paper "Human-in-the-Loop Assisted de Novo Molecular Design".☆24Updated 2 years ago
- Examples of applications of pymbar to various problems in simulation and experiment☆23Updated 10 years ago
- Automated reaction discovery and dataset generation with the growing string method☆21Updated 5 years ago
- Accelerated sampling framework with autoencoder-based method☆23Updated 6 years ago
- Software tools for fragment-based drug discovery (FBDD)☆27Updated 5 years ago
- ☆20Updated 2 years ago
- Absolute solvation free energy calculations with OpenFF and OpenMM☆26Updated last year
- ☆31Updated 2 years ago
- Contrastive pretraining to learn chemical reaction representations (RxnRep) for downstream tasks.☆34Updated 3 years ago
- Generate Boltzmann-weighted Sterimol Steric Parameters for Conformationally-Flexible Substituents☆31Updated 3 years ago
- Conformer-Rotamer Ensemble Sampling Tool based on the xtb Semiempirical Extended Tight-Binding Program Package☆34Updated last month
- Package for reading, analysis and visualization of metadynamics HILLS☆38Updated 2 years ago
- Generate images of molecules and their properties for use in presentations and reports☆43Updated 3 years ago
- ☆17Updated last year
- metallocage construction and binding affinity calculations☆16Updated 2 years ago
- Scripts, inputs and the results generated as part of the training the Sage line of OpenFF force fields.☆21Updated 6 months ago
- To run metadynamics simulations using openMM (based on Peter Eastman's script)☆13Updated 6 years ago
- Platforms to predict reactivity for substitution reactions.☆20Updated 4 years ago
- Jupyter Notebook Tutorials for Creating Chemical Space Networks☆38Updated 2 years ago
- ☆40Updated 2 years ago
- Synthetic Bayesian Classification☆47Updated 4 years ago
- Python for chemoinformatics☆52Updated 6 years ago