Alignment-free structure prediction using protein language models
☆22Nov 2, 2022Updated 3 years ago
Alternatives and similar repositories for EMBER2
Users that are interested in EMBER2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆10Nov 10, 2023Updated 2 years ago
- DistilProtBert implementation, a distilled version of ProtBert model.☆15Sep 21, 2022Updated 3 years ago
- ☆110Nov 28, 2023Updated 2 years ago
- Alignment-Free Taxonomic Classification Deep Learning Model☆17Apr 8, 2026Updated 4 months ago
- ☆11Mar 28, 2024Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A set a basic Python scripts to edit a multiple sequence alignment and generate a protein consensus sequence☆19Jun 9, 2022Updated 4 years ago
- TreeKnit is a package that infers Ancestral Reassortment Graphs for segmented genomes (typically, human influenza).☆14Feb 18, 2025Updated last year
- DISTEVAL: A web-server for evaluating protein inter-residue distances☆18Mar 7, 2022Updated 4 years ago
- Repository of Jupyter Notebooks on Colab, Binder and Huggingface for Bio, Chemistry and Physics☆13Jul 29, 2023Updated 3 years ago
- Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.☆13Sep 26, 2017Updated 8 years ago
- BioSeq-BLM: a platform for analyzing DNA, RNA and protein sequences based on biological language models☆14Aug 21, 2022Updated 3 years ago
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆21Apr 10, 2023Updated 3 years ago
- ☆15Dec 21, 2021Updated 4 years ago
- Prediction of protein substitution impact using a directional substitution matrix and homolog alignments☆12Oct 25, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- pretrained LookingGlass language model for biological read-length DNA sequences, and related models derived from transfer learning☆17Feb 19, 2026Updated 5 months ago
- Multi-Task Topological Laplacian deep learning model that predicts binding free energy changes upon mutation☆13Dec 13, 2024Updated last year
- Deep learning based alignment-free method for protein family modeling and prediction☆16Jul 31, 2018Updated 8 years ago
- Detection of remote homology by comparison of protein language model representations☆65Dec 16, 2024Updated last year
- This is the code for our paper Ligand Binding Prediction using Protein Structure Graphs and Residual Graph Attention Networks☆11Apr 29, 2022Updated 4 years ago
- Evolutionary velocity with protein language models☆98Dec 9, 2025Updated 8 months ago
- ☆24Feb 7, 2022Updated 4 years ago
- Help file for running the scripts to learn and evaluate graph convolution networks for epitope and paratope prediction☆35Jun 8, 2020Updated 6 years ago
- VESPA is a simple, yet powerful Single Amino Acid Variant (SAV) effect predictor based on embeddings of the Protein Language Model ProtT5…☆36Mar 4, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A fast, user-friendly analysis and evaluation toolkit for some DNA sequence classification tasks☆15Sep 22, 2018Updated 7 years ago
- a toolbox for the manipulation, modelling and analysis of molecular structures☆28Nov 27, 2025Updated 8 months ago
- A 3D-equivariant neural network for protein structure accuracy estimation☆22Feb 24, 2023Updated 3 years ago
- cime public repository☆32Jan 12, 2023Updated 3 years ago
- Taxa Insertion by Parsimony☆16Jan 22, 2025Updated last year
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆41Aug 29, 2025Updated 11 months ago
- A collection of *fold* tools☆304Aug 8, 2025Updated last year
- ☆11Oct 21, 2022Updated 3 years ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆69Mar 16, 2026Updated 4 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆13Jan 12, 2021Updated 5 years ago
- Tool to submit viral sequences to Genbank.☆16May 14, 2026Updated 2 months ago
- DAQ: Residue-Wise Local Quality Estimation for Protein Models from Cryo-EM Maps☆17Jan 30, 2026Updated 6 months ago
- Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox☆20Jan 30, 2019Updated 7 years ago
- ☆30Oct 20, 2023Updated 2 years ago
- High-throughput framework for running molecular simulations for METL☆22Sep 18, 2025Updated 10 months ago
- An awesome YAML-based CV that works with your existing Jekyll site☆11Jan 10, 2019Updated 7 years ago