kansil / PROBE
Trainable representation analysis study repository
☆42Updated 3 years ago
Alternatives and similar repositories for PROBE
Users that are interested in PROBE are comparing it to the libraries listed below
Sorting:
- Protein language model trained on coding DNA☆47Updated 6 months ago
- RNA Multiple Sequence Alignment☆40Updated last year
- ☆36Updated 4 months ago
- ☆68Updated 7 months ago
- Fast deep learning methods for large-scale protein-protein interaction screening☆39Updated 2 weeks ago
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆32Updated 5 months ago
- Alignment-free structure prediction using protein language models☆22Updated 2 years ago
- Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python☆30Updated last year
- Efficient implementatin of ESM family.☆56Updated 3 months ago
- A generalized enzyme kinetics parameter prediction model.☆41Updated 5 months ago
- Protein Design by Machine Learning guided Directed Evolution☆39Updated last month
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆59Updated 9 months ago
- Python package to atom map, correct and suggest enzymatic reactions☆38Updated last year
- Inference code for Bio-Inspired Antibody Language Model☆24Updated 8 months ago
- Learning the language of protein-protein interactions☆73Updated 3 weeks ago
- ☆38Updated 4 months ago
- Finetuning ProGen2 protein language model for generation of protein sequences from selected protein families.☆58Updated 3 months ago
- ☆49Updated last month
- A foundation model approach to guide antimicrobial peptide design in the era of artificial intelligence driven scientific discovery☆31Updated 3 weeks ago
- Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…☆63Updated last year
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆35Updated 8 months ago
- Code repository of "Deep generative design of RNA family sequences"☆33Updated 10 months ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆69Updated 4 months ago
- ☆32Updated 2 years ago
- PaccMann models for protein language modeling☆42Updated 3 years ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆58Updated 4 years ago
- The code used to generate the results from Parkinson / Hard et al. 2022☆17Updated 2 weeks ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆84Updated last year
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆51Updated 5 months ago
- ☆36Updated 2 years ago