kansil / PROBE
Trainable representation analysis study repository
☆41Updated 2 years ago
Alternatives and similar repositories for PROBE:
Users that are interested in PROBE are comparing it to the libraries listed below
- Protein language model trained on coding DNA☆46Updated 4 months ago
- ☆65Updated 4 months ago
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆32Updated 2 months ago
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆34Updated 5 months ago
- Alignment-free structure prediction using protein language models☆22Updated 2 years ago
- TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.☆50Updated 10 months ago
- RNA Multiple Sequence Alignment☆32Updated last year
- ☆33Updated last month
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆57Updated 3 years ago
- ☆69Updated 5 months ago
- Collecting AMP MIC data from different sources, then running a GAN to output promising sequences☆66Updated 6 months ago
- PaccMann models for protein language modeling☆41Updated 3 years ago
- Fast deep learning methods for large-scale protein-protein interaction screening☆34Updated 4 months ago
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆60Updated 6 months ago
- ☆24Updated last year
- Feature map and function annotation of Proteins☆31Updated 8 months ago
- Python package to atom map, correct and suggest enzymatic reactions☆35Updated 10 months ago
- ☆25Updated 8 months ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆81Updated 10 months ago
- Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python☆29Updated last year
- Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…☆60Updated last year
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆69Updated last month
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆100Updated last month
- Finetuning ProGen2 protein language model for generation of protein sequences from selected protein families.☆48Updated 2 weeks ago
- Public repository describing training and testing of AntiBERTa.☆57Updated last year
- ColabFold protocol☆48Updated 4 months ago
- Geometric deep learning of protein–DNA binding specificity☆62Updated 4 months ago
- Transformer Based Language Model for Peptide Property Prediction☆37Updated 6 months ago
- ☆32Updated 2 years ago
- Machine learning prediction of enzyme optimum pH☆29Updated 2 weeks ago