Alternatives and similar repositories for GPSite

Users that are interested in GPSite are comparing it to the libraries listed below

• SNU-CSSB / RF2-Lite
  ☆31Updated last year
• Wang-Lin-boop / GetPDB
  Download pdb/protein structures using Uniprot id; This script will download related PDB files, extract chains(Optional), remove duplicate…
  ☆46Updated last year
• GreiffLab / manuscript_ab_epitope_interaction
  ☆25Updated last year
• piercelab / tcrmodel2
  ☆45Updated 8 months ago
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆90Updated last year
• MIDIfactory / AlphaFastPPi
  Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening
  ☆39Updated last year
• steineggerlab / colabfold-protocol
  ColabFold protocol
  ☆57Updated last year
• PDB-REDO / AlphaBridge
  ☆46Updated 3 weeks ago
• jbderoo / PAbFold
  Epitope Prediction Pipeline and analysis tools built around AlphaFold 2
  ☆20Updated last year
• gwlilabmit / FragFold
  Fragment binding prediction with ColabFold
  ☆38Updated 2 weeks ago
• Wang-Lin-boop / PPI-Miner
  A Motif-Based PPI Searching Pipeline for PPI Mining and Protein Design
  ☆19Updated 9 months ago
• ddd9898 / DeepNano
  Repository for paper Nanobody–antigen interaction prediction with ensemble deep learning and prompt-based protein language models.
  ☆42Updated 11 months ago
• minmarg / gtalign_alpha
  GTalign, high-performance protein structure alignment, superposition and search
  ☆51Updated 3 months ago
• BioComputingUP / MobiDB-lite
  Long disorder consensus predictor
  ☆17Updated 2 months ago
• timkartar / DeepPBS
  Geometric deep learning of protein–DNA binding specificity
  ☆76Updated 8 months ago
• psipred / Merizo
  Fast and accurate protein domain segmentation using Invariant Point Attention
  ☆42Updated 6 months ago
• DeepRank / DeepRank-GNN-esm
  Graph Network for protein-protein interface including language model features
  ☆33Updated last year
• CSUBioGroup / DPFunc
  ☆57Updated 3 months ago
• KULL-Centre / _2022_functional-sites-cagiada
  ☆23Updated 2 years ago
• DeepRank / PSSMGen
  Generates consistent PSSM and/or PDB files for protein-protein complexes
  ☆20Updated 3 years ago
• xinyu-dev / annotate_v
  Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python
  ☆30Updated 2 years ago
• beckham-lab / EpHod
  Machine learning prediction of enzyme optimum pH
  ☆47Updated 7 months ago
• tymor22 / protein-vec
  Repository for Protein-Vec, a protein embedding mixture of experts model
  ☆38Updated last year
• wells-wood-research / BAlaS
  Source code for the BUDE Alanine Scan web application.
  ☆12Updated 6 months ago
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆54Updated 3 months ago
• CongLabCode / RoseTTAFold2-PPI
  Fast deep learning methods for large-scale protein-protein interaction screening
  ☆99Updated 3 months ago
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆59Updated 4 years ago
• ELELAB / mutatex
  scripts and facilities for in-silico mutagenesis with FoldX
  ☆61Updated 4 months ago
• biomed-AI / GraphSite
  GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures
  ☆61Updated last year
• GodzikLab / FATCAT-dist
  ☆17Updated 2 years ago