biomed-AI / GPSiteLinks
Geometry-aware protein binding site predictor
☆20Updated 11 months ago
Alternatives and similar repositories for GPSite
Users that are interested in GPSite are comparing it to the libraries listed below
Sorting:
- Generates consistent PSSM and/or PDB files for protein-protein complexes☆20Updated 3 years ago
- Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python☆30Updated 2 years ago
- Repository for paper Nanobody–antigen interaction prediction with ensemble deep learning and prompt-based protein language models.☆39Updated 7 months ago
- ☆25Updated last year
- ☆41Updated 4 months ago
- Machine learning-driven antibody design☆60Updated 2 years ago
- ☆23Updated 4 years ago
- Fragment binding prediction with ColabFold☆35Updated 4 months ago
- Graph Network for protein-protein interface including language model features☆32Updated last year
- Code for deep learning guided design of dynamic proteins☆30Updated last year
- ☆22Updated 2 years ago
- A Motif-Based PPI Searching Pipeline for PPI Mining and Protein Design☆19Updated 6 months ago
- This repository contains scripts, data and jupyter notebooks used to produce the evaluation results in the BioPhi 2021 publication☆17Updated 2 years ago
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆30Updated last year
- Download pdb/protein structures using Uniprot id; This script will download related PDB files, extract chains(Optional), remove duplicate…☆42Updated last year
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆60Updated 4 years ago
- ☆37Updated last month
- The official codebase of peptidy, a peptide processing tool for machine learning.☆32Updated 3 months ago
- ☆9Updated 2 years ago
- An antibody-specific language model focusing on NGL prediction☆30Updated 11 months ago
- Tools for annotation, processing and ML for antibody sequences☆31Updated this week
- Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening☆39Updated 10 months ago
- ☆30Updated last year
- ☆51Updated last week
- EvolveX, a de novo antibody computational design pipeline.☆12Updated 7 months ago
- ☆17Updated 2 years ago
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆37Updated last year
- HoTS: Sequence-based prediction of binding regions and drug-target interactions.☆26Updated 2 years ago
- Computationally Restoring the Potency of a Clinical Antibody☆18Updated last year
- A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking☆29Updated last month