biomed-AI / GPSiteLinks
Geometry-aware protein binding site predictor
☆25Updated last year
Alternatives and similar repositories for GPSite
Users that are interested in GPSite are comparing it to the libraries listed below
Sorting:
- ☆25Updated last year
- Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python☆30Updated 2 years ago
- A Motif-Based PPI Searching Pipeline for PPI Mining and Protein Design☆19Updated 10 months ago
- Fragment binding prediction with ColabFold☆39Updated last month
- ☆17Updated 2 years ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Updated last year
- Graph Network for protein-protein interface including language model features☆34Updated last year
- ☆31Updated last year
- ☆23Updated 2 years ago
- Fast deep learning methods for large-scale protein-protein interaction screening☆108Updated 4 months ago
- A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking☆29Updated 5 months ago
- ColabFold protocol☆57Updated last year
- Machine learning models for antibody sequences in PyTorch☆41Updated 4 years ago
- Machine learning-driven antibody design☆62Updated 2 years ago
- Repository for paper Nanobody–antigen interaction prediction with ensemble deep learning and prompt-based protein language models.☆42Updated 11 months ago
- Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening☆39Updated last year
- ☆28Updated 9 months ago
- Download pdb/protein structures using Uniprot id; This script will download related PDB files, extract chains(Optional), remove duplicate…☆46Updated last year
- Generates consistent PSSM and/or PDB files for protein-protein complexes☆20Updated 3 years ago
- ☆54Updated 4 months ago
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆38Updated last year
- Geometric deep learning of protein–DNA binding specificity☆76Updated 9 months ago
- Machine learning prediction of enzyme optimum pH☆48Updated 7 months ago
- Fast and accurate protein domain segmentation using Invariant Point Attention☆42Updated 6 months ago
- ☆48Updated last week
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆60Updated 4 years ago
- ☆36Updated 11 months ago
- ☆25Updated 2 years ago
- p-IgGen: A Generative Paired Antibody Language Model☆13Updated 7 months ago
- ☆30Updated 7 months ago