gitter-lab / prmfLinks
Pathway-Regularized Matrix Factorization
☆12Updated 5 years ago
Alternatives and similar repositories for prmf
Users that are interested in prmf are comparing it to the libraries listed below
Sorting:
- Dimensionality reduction for single cell RNA-seq data☆36Updated 5 years ago
- pandasGWAS: a Python package for easy retrieval of GWAS Catalog data☆16Updated last year
- ☆23Updated 6 years ago
- Normalization for single cell RNA-seq data☆48Updated 3 months ago
- ☆55Updated 7 months ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- Discrete Distributional Differential Expression☆22Updated 6 years ago
- post-clustering differential expression test☆36Updated 6 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- consistent quantification of external RNA-seq data sets☆58Updated last year
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- Mean Alterations Using Discrete Expression☆14Updated last year
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- easy access to benchmark datasets☆50Updated 7 years ago
- ☆21Updated 8 years ago
- R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.☆66Updated 7 years ago
- ☆35Updated 6 months ago
- Exon-Intron Split Analysis (EISA) in R☆16Updated last week
- Linseed: LINear Subspace identification for gene Expresion Deconvolution☆31Updated 3 weeks ago
- Single-cell Scalable Visualization and Analytics☆26Updated 6 years ago
- ☆29Updated 2 years ago
- Code and simulations using biologically annotated neural networks☆21Updated 4 years ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆51Updated last year
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 2 years ago
- Beta-Poisson model for single-cell RNA-seq data analyses☆16Updated 6 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆39Updated 6 years ago
- Generate cellular maps of differentiation manifolds with complex topologies.☆27Updated 7 years ago
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆41Updated 3 years ago
- Human transcription factor target genes from 6 databases in convenient R format.☆86Updated 6 years ago
- GiniClust: Detecting Rare Cell Types from Single-Cell Gene Expression Data with Gini Index☆35Updated 7 years ago