Pathway-Regularized Matrix Factorization
☆12Apr 6, 2020Updated 5 years ago
Alternatives and similar repositories for prmf
Users that are interested in prmf are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Maximum mean discrepancy comparisons for single cell profiling experiments☆20Feb 9, 2022Updated 4 years ago
- Hierarchical stochastic block model (HSBM)☆19Jul 14, 2021Updated 4 years ago
- Sparse Signaling Pathway Sampling: MCMC for signaling pathway inference☆14Oct 24, 2022Updated 3 years ago
- Multi-layer Recurrent Neural Networks (LSTM) for character-level language models in Python using Tensorflow☆15Jan 13, 2018Updated 8 years ago
- A Database-based knowledge back-end built on and for INDRA. The INDRA Database is a service that can be set up by any user with their own…☆18Mar 2, 2026Updated 3 weeks ago
- TCGA Benchmark Tasks for Clinical Attribute Prediction based on Genome☆14Mar 16, 2021Updated 5 years ago
- Mean Alterations Using Discrete Expression☆14Apr 9, 2024Updated last year
- ☆13Jan 6, 2021Updated 5 years ago
- Multi-Omic Strategies for TWAS☆13Mar 27, 2023Updated 2 years ago
- ☆15Apr 29, 2023Updated 2 years ago
- METAgenomic LONgitudinal Differential Abundance method☆16Dec 17, 2019Updated 6 years ago
- fast bgen parser for python☆16Updated this week
- Reconstruction of spatial context of gene expression with optimal transport☆11Mar 14, 2019Updated 7 years ago
- ☆13Aug 9, 2024Updated last year
- scPrisma is a spectral analysis method, for pseudotime reconstruction, informative genes inference, filtering, and enhancement of underly…☆19Mar 31, 2024Updated last year
- PyBioPAX: A python implementation of the BioPAX object model☆27May 10, 2024Updated last year
- ☆12Mar 7, 2022Updated 4 years ago
- R toolbox for Archetypal Analysis and Pareto Task Inference on single cell data (based on ParTI)☆32Jul 27, 2020Updated 5 years ago
- Phylogenetic profiling with orthology data☆13Oct 10, 2025Updated 5 months ago
- The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…☆20Apr 10, 2025Updated 11 months ago
- A R Bioconductor package for accessing MyGene.info services☆11Jun 22, 2018Updated 7 years ago
- Calculate Halstead complexity software measures using ASTParser. These metrics are computed statically, without program execution.☆24Feb 22, 2019Updated 7 years ago
- R package for Non-negative Tensor Decomposition☆20May 13, 2024Updated last year
- Imperial Chemistry department's introduction to programming using Python☆10Jun 7, 2025Updated 9 months ago
- Sliding Window Inference for Network Generation☆10Feb 14, 2018Updated 8 years ago
- Hierarchical Clustering with Prototypes☆10Apr 1, 2022Updated 3 years ago
- Pathway-Level Information Extractor (PLIER): a generative model for gene expression data☆54Aug 30, 2024Updated last year
- Single-cell exploratory data analysis for RNA-Seq☆40Apr 24, 2021Updated 4 years ago
- Documentations and Tutorials of Gosling.js☆12Sep 13, 2021Updated 4 years ago
- A Cython Machine Learning library dedicated to Hidden Markov Models☆35Aug 1, 2023Updated 2 years ago
- A simple script to create a customizable html file from an AnnotSV output.☆20May 3, 2024Updated last year
- ☆27Mar 1, 2026Updated 3 weeks ago
- ☆23Jul 18, 2019Updated 6 years ago
- A Python library for calculating string distances using C extensions (with a pure Python fallback)☆17Sep 2, 2020Updated 5 years ago
- ☆32Jul 5, 2021Updated 4 years ago
- Docker image of JBrowse Genome Browser☆15Apr 12, 2021Updated 4 years ago
- Plot categorical heatmaps with seaborn☆17Aug 30, 2022Updated 3 years ago
- fast webservices based query tool for large sets of genomic features☆26May 10, 2025Updated 10 months ago
- Spatially-resolved Transcriptomics via Epitope Anchoring☆20Apr 1, 2024Updated last year