Pathway-Regularized Matrix Factorization
☆12Apr 6, 2020Updated 5 years ago
Alternatives and similar repositories for prmf
Users that are interested in prmf are comparing it to the libraries listed below
Sorting:
- Mean Alterations Using Discrete Expression☆14Apr 9, 2024Updated last year
- Multi-Omic Strategies for TWAS☆13Mar 27, 2023Updated 2 years ago
- Maximum mean discrepancy comparisons for single cell profiling experiments☆19Feb 9, 2022Updated 4 years ago
- Hierarchical stochastic block model (HSBM)☆19Jul 14, 2021Updated 4 years ago
- ☆23Jul 18, 2019Updated 6 years ago
- fast webservices based query tool for large sets of genomic features☆25May 10, 2025Updated 9 months ago
- ☆27Oct 23, 2024Updated last year
- A python package for chromVAR☆33May 1, 2023Updated 2 years ago
- A Cython Machine Learning library dedicated to Hidden Markov Models☆35Aug 1, 2023Updated 2 years ago
- A Library for Denoising Single-Cell Data with Random Matrix Theory☆37Aug 16, 2023Updated 2 years ago
- ☆11Oct 10, 2024Updated last year
- Code for the analysis performed in the paper "Transcription factor stoichiometry, motif affinity and syntax regulate single-cell chromati…☆12Oct 16, 2025Updated 4 months ago
- R package to identify genes with differential distributions in single-cell RNA-seq☆34Mar 24, 2022Updated 3 years ago
- GWAS gold standards repository☆40Nov 23, 2023Updated 2 years ago
- R toolbox for Archetypal Analysis and Pareto Task Inference on single cell data (based on ParTI)☆32Jul 27, 2020Updated 5 years ago
- Imperial Chemistry department's introduction to programming using Python☆10Jun 7, 2025Updated 8 months ago
- ☆12Aug 30, 2025Updated 6 months ago
- ☆11Updated this week
- Store collections of experimental data based on TileDB☆12Feb 23, 2026Updated last week
- Sliding Window Inference for Network Generation☆10Feb 14, 2018Updated 8 years ago
- class materials for MCB517A through UW/Fred Hutch☆12Dec 5, 2019Updated 6 years ago
- Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS☆15May 3, 2022Updated 3 years ago
- metadata and data from the database☆42Jan 29, 2020Updated 6 years ago
- Single-cell exploratory data analysis for RNA-Seq☆40Apr 24, 2021Updated 4 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Dec 14, 2021Updated 4 years ago
- A machine learning library focused on deep learning☆11Jun 2, 2015Updated 10 years ago
- SUmmarizing Multiple Enrichment analysis Results☆10Nov 14, 2024Updated last year
- Annotated sequence data☆11Feb 2, 2025Updated last year
- Convert "Complete National Geographic" CNG files to JPG for use under Linux☆10Apr 8, 2024Updated last year
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…☆11Oct 15, 2025Updated 4 months ago
- python script to programmatically enrich your data using Enrichr API☆12Jul 5, 2017Updated 8 years ago
- computational training at Fred Hutch☆12Jun 11, 2021Updated 4 years ago
- Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments☆10Mar 13, 2021Updated 4 years ago
- A tutorial on NMFreg applied to cerebellum data.☆12Apr 7, 2020Updated 5 years ago
- ☆13Nov 30, 2018Updated 7 years ago
- polygenic scores using variational inference on GWAS summary statistics from multiple cohorts☆11Dec 7, 2022Updated 3 years ago
- Phylogenetic profiling with orthology data☆13Oct 10, 2025Updated 4 months ago
- A R Bioconductor package for accessing MyGene.info services☆11Jun 22, 2018Updated 7 years ago
- Precursor microRNA Identification Using Deep Convolutional Neural Networks☆11Oct 31, 2018Updated 7 years ago