saketkc / riboraptor
Tool for ribo-seq analysis. Most of the functionality moved to ribotricer (https://github.com/smithlabcode/ribotricer)
☆13Updated 4 years ago
Alternatives and similar repositories for riboraptor
Users that are interested in riboraptor are comparing it to the libraries listed below
Sorting:
- Tool for RNA-Seq analysis.☆39Updated 3 years ago
- HOT regions paper☆11Updated 5 years ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated last year
- ☆23Updated 3 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated 10 months ago
- a set of NGS pipelines☆24Updated 2 weeks ago
- Merge fastq files split over lanes☆20Updated 7 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 2 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated last year
- Accurate estimation and robust modelling of translation dynamics at codon resolution☆20Updated 7 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- ☆15Updated 2 years ago
- A small R package to make sequencing read coverage plots in R.☆38Updated 2 years ago
- Pipeline for Quality Control of Ribo-Seq data, selection of P-site offsets, and codon usage statistics.☆18Updated last year
- Documentation for vcfR☆11Updated this week
- 📊 An R package of RNA-seq workflow☆16Updated 3 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Motif manipulation functions for R.☆28Updated 3 weeks ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 9 months ago
- Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow☆27Updated 7 months ago
- Genomic data interpretation and visualization Workshop☆19Updated last year
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- This github repository contains code to reproduce the analysis in our paper "Variability in estimated gene expression among commonly used…☆28Updated last year
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆22Updated 6 years ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Useful tools for working with Salmon output☆37Updated 4 years ago
- RNA-seq workflow: differential transcript usage☆21Updated last year