Tool for ribo-seq analysis. Most of the functionality moved to ribotricer (https://github.com/smithlabcode/ribotricer)
☆13Mar 5, 2021Updated 5 years ago
Alternatives and similar repositories for riboraptor
Users that are interested in riboraptor are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Riborex: Fast and flexible identification of differential translation from Ribo-seq data☆12Apr 9, 2021Updated 5 years ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆43Feb 14, 2026Updated 5 months ago
- Useful bash one-liners for bioinformatics.☆10Jun 26, 2017Updated 9 years ago
- An alignment and analysis pipeline for Ribosome Profiling and RNA-seq data☆13Jul 2, 2024Updated 2 years ago
- Code snippets that I used in blog posts at https://www.katzentante.at☆14Sep 9, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- SCREW: A Reproducible Workflow for Single-Cell Epigenomics☆11Oct 22, 2017Updated 8 years ago
- Bayesian Clustering and Imputation of Single Cell Methylomes☆16Jul 16, 2020Updated 6 years ago
- iDEP: integrated Differential Expression & Pathway analysis☆14Mar 1, 2019Updated 7 years ago
- Make rapid visualizations of RNA-seq data in R☆20Oct 7, 2025Updated 9 months ago
- Genome-wide assessment of differential translations with ribosome profiling data☆23May 6, 2025Updated last year
- Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline☆21May 29, 2026Updated 2 months ago
- release version☆61Jul 29, 2022Updated 4 years ago
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆19Jul 19, 2025Updated last year
- RiboDiff: Tool to detect changes in translational efficiency based on ribosome footprinting data☆24Oct 3, 2016Updated 9 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆10Jan 15, 2020Updated 6 years ago
- An R package for estimating library complexity☆13Sep 4, 2022Updated 3 years ago
- A copy of RiboTaper v1.2☆10Mar 14, 2021Updated 5 years ago
- do some exercise☆15Dec 2, 2025Updated 7 months ago
- A command palette for vim, akin to the ones found in Atom and Sublime Text.☆14Mar 5, 2016Updated 10 years ago
- Assessing the increase in power from increasing read depth in a given RNA-Seq study☆14May 13, 2019Updated 7 years ago
- The javascript implementation of the MMTF format.☆11Jun 26, 2017Updated 9 years ago
- 🍊🔬 Orange add-on for gene expression of single cell data☆17Jun 22, 2026Updated last month
- An interactive learning resource for next-generation sequencing (NGS) techniques☆34Oct 12, 2018Updated 7 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆10Apr 30, 2019Updated 7 years ago
- MISSION: Ultra Large-Scale Feature Selection using Count-Sketches☆13Oct 6, 2019Updated 6 years ago
- ☆28Jul 18, 2024Updated 2 years ago
- Base-wise aggregation and functional prediction for human non-coding regulatory variants☆14Dec 20, 2023Updated 2 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20May 19, 2026Updated 2 months ago
- Calculates the probability of a haplotype given a population reference panel☆12Dec 9, 2024Updated last year
- Pipeline for Quality Control of Ribo-Seq data, selection of P-site offsets, and codon usage statistics.☆19Aug 9, 2023Updated 2 years ago
- Ensembl Funcgen Perl API and SQL schema☆15Jul 21, 2025Updated last year
- Repository for signature genes from Immune Cell Atlas☆20Sep 25, 2019Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A software construction tool☆34Apr 16, 2011Updated 15 years ago
- Fast array utilities☆15Updated this week
- Processing WGS aDNA data using the ReichLab protocol☆13Mar 8, 2019Updated 7 years ago
- A short tutorial on using R + markdown☆19Sep 30, 2020Updated 5 years ago
- uORF-Tools are a workflow and a collection of tools for the analysis of 'Upstream Open Reading Frames' (short uORFs)☆13Jul 30, 2019Updated 6 years ago
- Collection of R functions used in the Hochwagen Lab☆12Aug 4, 2025Updated 11 months ago
- Novel Adjacency Identification with Barcoded Reads☆13Apr 19, 2022Updated 4 years ago