jrderuiter / pybiomartLinks
A simple pythonic interface to biomart.
☆55Updated 5 years ago
Alternatives and similar repositories for pybiomart
Users that are interested in pybiomart are comparing it to the libraries listed below
Sorting:
- A Python implementation of edgeR for differential expression analysis☆103Updated 6 years ago
- Parsing tools for GTF (gene transfer format) files☆121Updated 4 months ago
- machine-readable file format for genomic library sequence and structure☆120Updated this week
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆120Updated last year
- Tools for working with BUS files☆100Updated last month
- Python biomart API☆66Updated 2 years ago
- Pure-python implementation of UCSC liftOver genome coordinate conversion☆95Updated last year
- Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.☆110Updated 7 months ago
- Porting DESeq2 into python via rpy2☆68Updated 2 years ago
- Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.☆84Updated 4 years ago
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆31Updated 3 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆83Updated last month
- Python implementation of the Loom file format - http://loompy.org☆144Updated 6 months ago
- CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots☆94Updated 11 months ago
- Lightweight converter between hic and cool contact matrices.☆73Updated 11 months ago
- Tool for the detection and quantification of alternative splicing events from RNA-Seq data.☆108Updated 9 months ago
- MOODS: Motif Occurrence Detection Suite☆102Updated 2 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated last year
- IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:☆51Updated 3 years ago
- TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…☆105Updated last month
- Tools for making plots of genomic datasets in a genome-browser-like format☆32Updated 7 months ago
- Deep-learning Augmented RNA-seq analysis of Transcript Splicing☆114Updated last year
- A Python-based EGA download client☆101Updated 9 months ago
- CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology☆65Updated 2 years ago
- GeneWalk identifies relevant gene functions for a biological context using network representation learning☆131Updated 11 months ago
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆91Updated 5 years ago
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆46Updated 2 years ago
- liftover for python, made fast with cython☆89Updated 2 months ago
- Rails/Docker application for the Broad Institute's single cell RNA-seq data portal☆68Updated last week
- A modular Hi-C mapping pipeline☆97Updated 7 months ago