Code repository accompanying the manuscript, Symbiont loss and gain, rather than co-diversification shapes honeybee gut microbiota diversity and function
☆15Feb 21, 2025Updated last year
Alternatives and similar repositories for honeybee-cross-species-metagenomics
Users that are interested in honeybee-cross-species-metagenomics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tools developed in Python and Perl to support TCDB's functionality and research.☆12Aug 19, 2023Updated 3 years ago
- Python package for phage-host interaction prediction☆29Aug 31, 2026Updated last month
- Professional Comprehensive Omics Data Analysis☆32Apr 3, 2026Updated 6 months ago
- Sort Linked Read DNA Into Fragment Specific Clusters☆10Oct 5, 2021Updated 5 years ago
- Recording personal workflows used in work, study notes, and summaries of various tools and methods.☆11Oct 9, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Analysis scripts for snMultiome project☆16Dec 12, 2024Updated last year
- Single-cell genomic sequencing of the human gut microbiome☆13Jun 12, 2024Updated 2 years ago
- 《学个毛生信》源代码☆17May 8, 2026Updated 5 months ago
- ☆14Jun 1, 2026Updated 4 months ago
- Source code of ProDMM. The paper is titled with "Unveiling Protein-DNA Interdependency: Harnessing Unified Multimodal Sequence Modeling, …☆10Oct 12, 2026Updated 2 weeks ago
- Antimicrobial Peptide Scanner Version 2. Open source GLPv3 release of code from 2018 paper "Deep learning improves antimicrobial peptide …☆13Sep 26, 2026Updated last month
- A snakemake workflow for metagenomic projects☆15Feb 16, 2023Updated 3 years ago
- Tool for recognizing genetic codes (incl. multiple genetic codes in phage genomes) and genetic-code-informed annotation of coding regions…☆11Sep 9, 2023Updated 3 years ago
- G-quadruplex ML predictor (BMC Bioinf 2022) | Cited in Nature Comms & Cell☆11Feb 10, 2026Updated 8 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- MGM (Microbial General Model) as a large-scaled pretrained language model for interpretable microbiome data analysis.☆63Jan 26, 2026Updated 9 months ago
- Notebooks for detection and classification model training. Insect classification model. Python scripts for processing of data, collected …☆23Aug 7, 2026Updated 2 months ago
- Repository to store code used for the analyses presented in "Defining the Regulatory Logic of Breast Cancer Using Single-Cell Epigenetic …☆22May 17, 2025Updated last year
- MetaflowX: A Scalable and Resource-Efficient Workflow for Multi-Strategy Metagenomic Analysis☆43Feb 6, 2026Updated 8 months ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆40Aug 21, 2026Updated 2 months ago
- parKVFinder-win: thread-level parallel KVFinder for Windows☆10Sep 12, 2024Updated 2 years ago
- Two methods for mapping and visualizing associated data on phylogeny using ggtree☆12Dec 25, 2018Updated 7 years ago
- Development guidlines for software within NBIS.☆18Jul 1, 2025Updated last year
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Aug 13, 2020Updated 6 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆50Apr 14, 2020Updated 6 years ago
- Kuhlman Lab Installation of AlphaFold3☆42Oct 19, 2026Updated last week
- This repository contains all the course materials that are used in the "Chemo-informatics and computational drug design" course teaches a…☆11Oct 3, 2026Updated 3 weeks ago
- Gene family evolution analysis of OneKP capstone paper☆14May 10, 2021Updated 5 years ago
- ☆20Aug 10, 2022Updated 4 years ago
- R implementation of the LEfSe method☆68May 14, 2026Updated 5 months ago
- usegalaxy.* common tools☆22Updated this week
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆23Nov 24, 2025Updated 11 months ago
- 快速翻译一篇，两篇...好多篇英文文献的agent skill! | Agent skill for quickly translating one, two... many English papers!☆32Oct 20, 2026Updated last week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- The .genome specification — a self-describing consumer genome format designed for AI agents.☆18Aug 20, 2026Updated 2 months ago
- ☆16Jun 21, 2023Updated 3 years ago
- Code from our publications☆20Feb 6, 2026Updated 8 months ago
- ☆21Oct 23, 2026Updated last week
- Your dedicated research inspiration engine. An agent framework for generating high-quality, structured research ideas.☆13Mar 2, 2026Updated 7 months ago
- An et al. Nature Communications 2023☆15Jan 19, 2023Updated 3 years ago
- X future agent for autonomous life☆15Mar 20, 2026Updated 7 months ago