Alternatives and similar repositories for PREFACE:

Users that are interested in PREFACE are comparing it to the libraries listed below

• VUmcCGP / sanefalcon
  SANEFALCON (Single reAds Nucleosome-basEd FetAL fraCtiON): Calculating the fetal fraction for noninvasive prenatal testing based on genom…
  ☆14Updated 4 years ago
• babelomics / SMAca
  SMN1 copy-number and sequence variant analysis from next generation sequencing data
  ☆22Updated last year
• ikalatskaya / ISOWN
  ☆46Updated 5 years ago
• sfu-compbio / sinvict
  SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA
  ☆27Updated 4 years ago
• ctsa / svtools
  Tools for processing and analyzing structural variants.
  ☆33Updated 9 years ago
• tsy19900929 / snpeffToMaf
  Converts snpeff annotations into MAF
  ☆10Updated 7 months ago
• bioinformatics-IBCH / Comparison-study-of-germline-CNV-calling-tools
  ☆16Updated 3 years ago
• mhguo1 / TRAPD
  Burden testing against public controls
  ☆50Updated last year
• hall-lab / sv-pipeline
  Pipeline for structural variation detection in cohorts
  ☆49Updated 3 years ago
• deepomicslab / SpecHLA
  SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …
  ☆43Updated 3 weeks ago
• niu-lab / msisensor-ct
  Microsatellite instability (MSI) detection for cfDNA samples.
  ☆19Updated 4 years ago
• Clinical-Genomics / BALSAMIC
  Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer
  ☆46Updated this week
• EtieM / outLyzer
  An efficient Variant-Caller to highlight low allele-frequency tumor mutations in a clinical practice
  ☆11Updated last year
• ccagc / QDNAseq
  QDNAseq package for Bioconductor
  ☆49Updated 8 months ago
• molgenis / NIPTeR
  R Package for Non Invasive Prenatal Testing (NIPT) analysis
  ☆41Updated 5 years ago
• VUmcCGP / wisecondor
  WISECONDOR (WIthin-SamplE COpy Number aberration DetectOR): Detect fetal trisomies and smaller CNV's in a maternal plasma sample using wh…
  ☆44Updated 11 months ago
• RahmanTeam / DECoN
  ☆53Updated 2 years ago
• liusihan / seGMM
  A new tool to infer sex from massively parallel sequencing data.
  ☆16Updated 10 months ago
• tommyau / bamclipper
  Remove primer sequence from BAM alignments by soft-clipping
  ☆31Updated 5 years ago
• PubuduSaneth / cnvScan
  CNV screening and annotation tool
  ☆25Updated 8 years ago
• Genotek / ClassifyCNV
  ClassifyCNV: a tool for clinical annotation of copy-number variants
  ☆62Updated last year
• TheJacksonLaboratory / SVE
  ☆51Updated 5 years ago
• gatk-workflows / gatk4-mitochondria-pipeline
  This repo is be archived, these workflows are still housed housed in the GATK repository under the scripts directory. The workflows are a…
  ☆21Updated 5 years ago
• KCCG / ClinSV
  Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data
  ☆68Updated 7 months ago
• rdemolgen / SavvySuite
  Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes
  ☆28Updated 9 months ago
• KHP-Informatics / illumina-array-protocols
  processing illumina SNP arrays
  ☆19Updated 8 years ago
• zd1 / telseq
  A software for calculating telomere length
  ☆68Updated 6 years ago
• pughlab / ConsensusCruncher
  ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…
  ☆21Updated 2 years ago
• hliang / cnv-seq
  cnv-seq with custom bugfix
  ☆10Updated 12 years ago
• WGLab / SeqMule
  Automated human exome/genome variants detection from FASTQ files
  ☆22Updated 3 years ago