iobio / minion
Server wrapper that turns command line tools into web services
☆62Updated 6 years ago
Alternatives and similar repositories for minion:
Users that are interested in minion are comparing it to the libraries listed below
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 6 years ago
- conda recipes for genomic data☆85Updated 3 years ago
- Flexible genotype query among 30,000+ samples whole-genome☆96Updated 5 years ago
- GA4GH Variation Representation Python Implementation☆53Updated last week
- De novo assembly based variant calling pipeline for Illumina short reads☆108Updated 4 years ago
- Extensible specification for representing and uniquely identifying biological sequence variation☆86Updated last week
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 2 years ago
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆97Updated last year
- This project is deprecated, please see strelka2 at https://github.com/Illumina/strelka☆38Updated 8 years ago
- Workflow Description Language compiler for the DNAnexus platform☆40Updated last year
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Updated 2 months ago
- EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.☆73Updated last month
- The gkno launcher for executing tools or pipelines☆32Updated 8 years ago
- Request for comments on interchangeable bioinformatics containers☆40Updated 5 years ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 5 years ago
- An iobio app for examining gene variants☆22Updated 6 years ago
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)☆87Updated 7 years ago
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆79Updated 2 weeks ago
- Fast spliced aligner with low memory requirements☆41Updated 9 years ago
- Utilities to create and analyze gVCF files☆39Updated 7 years ago
- A tool to genotype CYP2D6 with WGS data☆51Updated last year
- Visualization and annotation of CNVs from population-scale whole-genome sequencing data☆70Updated 7 years ago
- A collection of Python clients and accessory scripts for interacting with the Cromwell☆22Updated 2 years ago
- [Historical] Reproducible Analyses for Bioinformatics☆106Updated 5 years ago
- Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…☆63Updated last month
- This repository contains information about latest release from Genome in a Bottle project☆73Updated 5 years ago
- Browser for ExAC consortium data☆106Updated 3 years ago
- Sparse Project VCF: evolution of VCF to encode population genotype matrices efficiently☆58Updated last year