TRON-Bioinformatics / tronflow-hla-hd
A Nextflow workflow for HLA typing using HLA-HD
☆11Updated 9 months ago
Alternatives and similar repositories for tronflow-hla-hd:
Users that are interested in tronflow-hla-hd are comparing it to the libraries listed below
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆42Updated last week
- ☆21Updated 3 months ago
- Long-read Isoform Quantification and Analysis☆39Updated last week
- ☆23Updated 3 years ago
- ☆33Updated last year
- Third-generation fusion gene detection☆14Updated last year
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- Codes and Data for FFPEsig manuscript☆16Updated last year
- ☆38Updated 6 months ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated 4 months ago
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated 9 months ago
- MutSig2CV from Lawrence et al. 2014☆31Updated 4 years ago
- Benchmarking of CNV calling tools☆18Updated 5 years ago
- Tools for processing and analyzing structural variants.☆33Updated 9 years ago
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆10Updated 3 years ago
- Find and characterise transposable element insertions☆21Updated last year
- BISulfite-seq CUI Toolkit☆19Updated 3 months ago
- Integrative analysis of complex structural variants☆21Updated 4 years ago
- A script to make downloading of SRA/GEO data easier☆30Updated last year
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆17Updated 3 weeks ago
- Workflow for Nanopore Sequencing of 10x single cell libraries☆19Updated 2 weeks ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 6 years ago
- Reconstruction of focal amplifications with long reads☆18Updated this week
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆23Updated last year
- ☆20Updated 5 months ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 5 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes☆14Updated 3 weeks ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago