A Nextflow workflow for HLA typing using HLA-HD
☆14Jul 3, 2024Updated last year
Alternatives and similar repositories for tronflow-hla-hd
Users that are interested in tronflow-hla-hd are comparing it to the libraries listed below
Sorting:
- A script to run HLA typing tools from next generation sequencing data☆12Jan 4, 2023Updated 3 years ago
- R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping…☆14Jan 31, 2024Updated 2 years ago
- Tutorial for STAR-Fusion, FusionInspector, and de novo reconstruction of fusion transcripts using Trinity☆14Nov 21, 2019Updated 6 years ago
- Nextflow pipeline for Mutect2 somatic variant calling best practices☆23Jun 14, 2024Updated last year
- GWAS Survival Package in R☆13Nov 16, 2023Updated 2 years ago
- An efficient tool for cross-population fixation index estimation on variant call format files☆11Mar 1, 2026Updated last week
- A cell counter using computer vision techniques.☆10May 13, 2022Updated 3 years ago
- Genome scale metabolic models in SBML format☆10Nov 16, 2021Updated 4 years ago
- This repository contains the code developed for the NanOlympicsMod project.☆12Jan 29, 2024Updated 2 years ago
- Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools☆160Aug 10, 2022Updated 3 years ago
- For when you just need a coverage plot.☆11Mar 26, 2021Updated 4 years ago
- Cancer Suppressor Gene and Oncogene Prediction using Deep Learning (CNN)☆10Mar 7, 2018Updated 8 years ago
- Molecular Data Provider☆10Dec 17, 2025Updated 2 months ago
- Scripts in R for Landscape Genomics Analyses v.2☆10Feb 17, 2023Updated 3 years ago
- Data Standards Hackathon for NGS based typing.☆14Feb 2, 2026Updated last month
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆11Jul 8, 2021Updated 4 years ago
- Westlake BioBank for Chinese pilot project☆10May 17, 2023Updated 2 years ago
- Scalable genomic analysis pipelines, written in WDL☆11Feb 24, 2026Updated last week
- ☆10Oct 18, 2021Updated 4 years ago
- Static analyzer for dynamics of Automata Networks☆12Feb 3, 2021Updated 5 years ago
- ☆15May 22, 2025Updated 9 months ago
- Template for PhD thesis using Tufte's style book☆11Mar 13, 2020Updated 5 years ago
- ARCHIVED: this has been folded into the owlapi☆11Oct 27, 2020Updated 5 years ago
- ☆13Dec 3, 2018Updated 7 years ago
- simpler single cell RNAseq data Visualization☆10Feb 28, 2025Updated last year
- workflow to analysis of whole-exome-sequencing☆12Feb 12, 2020Updated 6 years ago
- NHC: A computational approach to detect physiological homogeneity in the midst of genetic heterogeneity☆12Feb 25, 2026Updated last week
- Jupyter wrapper kernel for singular☆11Jun 12, 2024Updated last year
- probability of mendelian error in trios.☆11Jan 27, 2016Updated 10 years ago
- ☆13Apr 5, 2024Updated last year
- This has been archived and active development transferred to gitlab.com/genomicsengland/gelreportmodels/GelReportModels☆14May 14, 2021Updated 4 years ago
- Statistical inference of recent positive selection using IBD segments☆14Sep 23, 2025Updated 5 months ago
- AncestralPaths is a local ancestry painting technique based on genealogies produced by RELATE. The method aims to assign 'path' ancestrie…☆11Jun 29, 2023Updated 2 years ago
- "Causality: Models, Reasoning, and Inference-Judea Pearl(2009)"中文翻译及学习笔记☆15Feb 18, 2022Updated 4 years ago
- ☆12Jul 10, 2022Updated 3 years ago
- ☆11Feb 22, 2023Updated 3 years ago
- Generic methods, types and modules for the BioJulia ecosystem.☆12Jul 11, 2024Updated last year
- An R package for extracting mutational signatures from vcf files☆11Feb 13, 2025Updated last year
- Transcription Factor Co-Occurrence using Market Basket analysis☆16Jul 7, 2025Updated 8 months ago