Materials for EN.601.449/649 Computational Genomics: Applied Comparative Genomics
☆30Sep 9, 2024Updated last year
Alternatives and similar repositories for appliedgenomics2023
Users that are interested in appliedgenomics2023 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated 2 years ago
- ☆17Aug 8, 2025Updated last year
- ☆11Mar 14, 2026Updated 5 months ago
- Pipeline for eukaryotic genome annotation based on external evidences☆15Feb 23, 2023Updated 3 years ago
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆16Jan 25, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 8 years ago
- Course Materials for EN.601.452 / AS.020.415 Computational Biomedical Research & Advanced Biomedical Research☆16Nov 29, 2021Updated 4 years ago
- A complete Snakemake pipeline for detecting allele specific expression in RNA-seq☆10Jul 10, 2021Updated 5 years ago
- ☆20Oct 4, 2023Updated 2 years ago
- Example for TWAS☆12Jan 23, 2022Updated 4 years ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 3 years ago
- A toolkit for quality control & adjustment of nucleotide redundancy in bacterial pan-genome analyses☆21Feb 12, 2026Updated 6 months ago
- fastest GTF/GFF-to-BED converter chilling around☆32Jun 16, 2026Updated 2 months ago
- A graduate-level elective course: Python Programming for Life Science Students☆10Mar 26, 2026Updated 5 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- 🔎 wheeler graph recognition algorithm, visualization and generation☆21Jun 28, 2026Updated 2 months ago
- ☆10Feb 25, 2024Updated 2 years ago
- Main scripts and commands used to analyze goat population genetic and domestication☆19Mar 25, 2019Updated 7 years ago
- ☆11Mar 4, 2025Updated last year
- Draw pan- and core-genome curves from proteinortho output☆14Oct 26, 2023Updated 2 years ago
- 📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.☆108Updated this week
- ☆16May 23, 2026Updated 3 months ago
- Repository☆10Oct 23, 2024Updated last year
- Guide through code for a Minimmap2 genome alignment and a seq-seq-pan pan-genome alignment with visualizations in R. The tutorial present…☆19May 16, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- This is something I have decided to do to make something good come out of the current covid situation. Here I will put the publicly avail…☆12Sep 6, 2021Updated 4 years ago
- Materials for Spring 2021 Applied Genomics Course☆54Apr 21, 2021Updated 5 years ago
- Genome annotation pipeline☆67Jun 25, 2024Updated 2 years ago
- The pipelines were built in the project resolving the genome of a diploid potato. Most of the scripts were sepcially designed to perform …☆24Jul 4, 2023Updated 3 years ago
- An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictog…☆13Jun 18, 2026Updated 2 months ago
- Bedfile perturbation tool☆17Mar 6, 2026Updated 5 months ago
- ☆10Apr 10, 2016Updated 10 years ago
- Efficient, parallel compression for terabyte-scale data☆64Feb 25, 2026Updated 6 months ago
- scripts for the project of seven thaliana genomes assembly☆42May 22, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- easy_sbatch - Batch submitting Slurm jobs with script templates☆16Dec 28, 2021Updated 4 years ago
- MONI: A Pangenomic Index for Finding MEMs☆38Mar 25, 2025Updated last year
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆26Sep 1, 2020Updated 6 years ago
- Assemble and following pipeline used in wisent genome paper.☆17Dec 23, 2016Updated 9 years ago
- Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS☆10Jul 20, 2017Updated 9 years ago
- ☆10Mar 4, 2025Updated last year
- Notes by Markdown in HZAU Bioinformatics Courses☆15Dec 16, 2025Updated 8 months ago