Template for building a small workflow in Nextflow
☆17May 2, 2022Updated 3 years ago
Alternatives and similar repositories for workflow-template-nextflow
Users that are interested in workflow-template-nextflow are comparing it to the libraries listed below
Sorting:
- Repository for discussion lectures (MCBL121, Winter 2024), up until I decided that google slides was way easier.☆25Dec 17, 2024Updated last year
- A taxonomic classifier for shotgun metagenomics reads☆11Apr 4, 2025Updated 11 months ago
- GitHub template repository for creating new barebones Nextflow pipelines, using the Arcadia-Science/nextflow-template cookiecutter templa…☆13Mar 21, 2023Updated 2 years ago
- ☆16May 22, 2023Updated 2 years ago
- A microbiome analysis toolkit for R☆25Aug 21, 2023Updated 2 years ago
- ☆24Feb 24, 2025Updated last year
- A Github action for running a Snakemake workflow☆62Dec 15, 2025Updated 2 months ago
- Hierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".☆30Apr 11, 2023Updated 2 years ago
- Fast, accurate taxonomic assignments for the human vaginal microbiota☆11Feb 11, 2026Updated 3 weeks ago
- ☆13Sep 20, 2024Updated last year
- A genome browser in your Jupyter notebook☆31May 12, 2025Updated 9 months ago
- a2council voting charts☆11Dec 28, 2024Updated last year
- Clonal reconstruction from HTS data☆10Oct 27, 2021Updated 4 years ago
- ☆11Dec 2, 2024Updated last year
- Woltka: a versatile meta'omic data classifier☆77Sep 8, 2025Updated 5 months ago
- ☆34Jun 12, 2019Updated 6 years ago
- A Nextflow workflow for HLA typing using HLA-HD☆14Jul 3, 2024Updated last year
- Harnessing FABRIC for Scalable Human Genome Sequence Analysis☆12Feb 7, 2026Updated 3 weeks ago
- ☆16Jul 5, 2019Updated 6 years ago
- metabCombiner R Package: Paired Untargeted Metabolomics Feature Matching & Data Concatenation☆13May 29, 2024Updated last year
- detectRuns: a R Package for Runs of Homozygosity and Runs of Heterozygosity☆12May 25, 2023Updated 2 years ago
- Alignment workflow for Kids-First DRC☆11Feb 12, 2026Updated 2 weeks ago
- 🧬 Unique (& conserved) DNA sequence identification☆14Jul 7, 2025Updated 7 months ago
- RaMWAS: Fast Methylome-Wide Association Study Pipeline for Enrichment Platforms☆10Sep 22, 2021Updated 4 years ago
- ARCHIVED: Activity moved to rostools organization.☆11Oct 17, 2023Updated 2 years ago
- Divine: Prioritizing Genes for Rare Mendelian Disease in Whole Exome Sequencing Data☆13Apr 18, 2019Updated 6 years ago
- This is a read-only mirror of the CRAN R package repository. glinternet — Learning Interactions via Hierarchical Group-Lasso Regulariza…☆13Sep 3, 2021Updated 4 years ago
- An R package for visualizing confounder control in meta-analyses☆11Jan 17, 2023Updated 3 years ago
- The curatedOvarianData package provides data for gene expression analysis in patients with ovarian cancer☆11Oct 30, 2025Updated 4 months ago
- RStudio Cloud ☁️ resources to accompany tidymodels.org☆12Oct 28, 2021Updated 4 years ago
- Fast and Efficient Tool to Simulate Summary Statistics from Genome-Wide Association Studies☆12May 21, 2024Updated last year
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated 11 months ago
- SPIRO is a Smart Plate Imaging Robot☆10Feb 23, 2026Updated last week
- A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.☆44Feb 5, 2026Updated 3 weeks ago
- A visualization tool for exploratory data analysis of metagenomic data☆39Mar 22, 2022Updated 3 years ago
- ☆15May 1, 2025Updated 10 months ago
- Analyzes whole genome sequencing data for gene-editing verification☆10Feb 6, 2026Updated 3 weeks ago
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…☆11Oct 15, 2025Updated 4 months ago
- Differential Mutation Analysis☆11May 24, 2020Updated 5 years ago