Alternatives and similar repositories for DNAGPT:

Users that are interested in DNAGPT are comparing it to the libraries listed below

• chenkenbio / SpliceBERT
  Primary RNA sequence model
  ☆35Updated 9 months ago
• a96123155 / UTR-LM
  ☆78Updated 5 months ago
• jimmylihui / GenBench
  ☆20Updated 3 weeks ago
• ychuest / Awesome-LLMs-meet-genomes
  Explore a comprehensive collection of basic theories, applications, papers, and best practices about Large Language Models (LLMs) in geno…
  ☆37Updated last week
• kundajelab / DART-Eval
  ☆31Updated 2 weeks ago
• ntranoslab / esm-variants
  ☆71Updated last year
• tianshilu / pMTnet
  Deep Learning the T Cell Receptor Binding Specificity of Neoantigen
  ☆78Updated 2 years ago
• Sanofi-Public / CodonBERT
  Repository for mRNA Paper and CodonBERT publication.
  ☆124Updated 9 months ago
• PharMolix / LangCell
  Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".
  ☆52Updated 2 months ago
• SuperBianC / scMulan
  Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.
  ☆57Updated 9 months ago
• a96123155 / TransPHLA-AOMP
  ☆41Updated 3 years ago
• dohlee / chromoformer
  The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)
  ☆34Updated last year
• xCompass-AI / GeneCompass
  GeneCompass
  ☆71Updated 7 months ago
• HelloWorldLTY / scEval
  Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.
  ☆64Updated last month
• ML-Bioinfo-CEITEC / genomic_benchmarks
  Benchmarks for classification of genomic sequences
  ☆134Updated last year
• ml4bio / USPNet
  Nature Computational Science: Unbiased organism-agnostic and highly sensitive signal peptide predictor with deep protein language model
  ☆31Updated 2 months ago
• jkobject / geneformer
  ☆52Updated last year
• kkyamada / bert-rbp
  ☆29Updated 2 years ago
• frederikkemarin / BEND
  Benchmarking DNA Language Models on Biologically Meaningful Tasks
  ☆108Updated 4 months ago
• MAGICS-LAB / DNABERT_S
  DNABERT_S: Learning Species-Aware DNA Embedding with Genome Foundation Models
  ☆91Updated last month
• sjgosai / boda2
  Computational Optimization of DNA Activity (CODA)
  ☆56Updated 2 months ago
• lbcb-sci / RiNALMo
  RiboNucleic Acid (RNA) Language Model
  ☆88Updated 2 weeks ago
• KarchinLab / bigmhc
  BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
  ☆50Updated 10 months ago
• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆101Updated 6 months ago
• OmicsML / CellPLM
  Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
  ☆78Updated 11 months ago
• viragbioinfo / IMMREP_2022_TCRSpecificity
  ☆19Updated 2 years ago
• terry-r123 / RNABenchmark
  [NeurIPS 2024] BEACON: Benchmark for Comprehensive RNA Tasks and Language Models
  ☆32Updated 7 months ago
• bowang-lab / genomic-FM
  ☆21Updated last month
• microsoft / zero-shot-scfoundation
  ☆57Updated 6 months ago
• maris205 / dnagpt
  GPT lanuage model for dna sequence
  ☆18Updated 3 months ago