Alternatives and similar repositories for DNAGPT

Users that are interested in DNAGPT are comparing it to the libraries listed below

• frederikkemarin / BEND
  Benchmarking DNA Language Models on Biologically Meaningful Tasks
  ☆125Updated last year
• ychuest / Awesome-LLMs-meet-genomes
  Explore a comprehensive collection of basic theories, applications, papers, and best practices about Large Language Models (LLMs) in geno…
  ☆104Updated 2 months ago
• a96123155 / UTR-LM
  ☆91Updated last year
• jkobject / geneformer
  ☆83Updated 2 months ago
• a96123155 / TransPHLA-AOMP
  ☆48Updated 3 years ago
• chenkenbio / SpliceBERT
  Primary RNA sequence model
  ☆39Updated last year
• jimmylihui / GenBench
  ☆23Updated 4 months ago
• ML-Bioinfo-CEITEC / genomic_benchmarks
  Benchmarks for classification of genomic sequences
  ☆162Updated 2 months ago
• Sanofi-Public / CodonBERT
  Repository for mRNA Paper and CodonBERT publication.
  ☆133Updated last year
• lbcb-sci / RiNALMo
  RiboNucleic Acid (RNA) Language Model
  ☆135Updated 3 weeks ago
• OATML-Markslab / EVE
  Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…
  ☆183Updated last year
• dohlee / chromoformer
  The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)
  ☆36Updated 2 years ago
• apeterswu / Awesome-Bio-Foundation-Models
  A collection of awesome bio-foundation models, including protein, RNA, DNA, gene, single-cell, and so on.
  ☆260Updated 5 months ago
• PharMolix / LangCell
  Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".
  ☆63Updated 10 months ago
• ntranoslab / esm-variants
  ☆80Updated 2 years ago
• theislab / chemCPA
  Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.
  ☆127Updated 8 months ago
• ArcInstitute / cell-eval
  Comprehensive suite for evaluating perturbation prediction models
  ☆96Updated last week
• mims-harvard / PINNACLE
  Contextual AI models for single-cell protein biology
  ☆89Updated 8 months ago
• calico / borzoi
  RNA-seq prediction with deep convolutional neural networks.
  ☆201Updated 2 months ago
• MAGICS-LAB / DNABERT_S
  [ISMB 2025] DNABERT_S: Learning Species-Aware DNA Embedding with Genome Foundation Models
  ☆116Updated 8 months ago
• microsoft / zero-shot-scfoundation
  ☆73Updated last year
• terry-r123 / RNABenchmark
  [NeurIPS 2024] BEACON: Benchmark for Comprehensive RNA Tasks and Language Models
  ☆52Updated last year
• lingxusb / megaDNA
  ☆74Updated last year
• aristoteleo / awesome-bioagent-papers
  Agent self-driven repository on bio-agent papers, i.e. papers on LLM-based agents in biology and medicine.
  ☆76Updated last week
• sjgosai / boda2
  Computational Optimization of DNA Activity (CODA)
  ☆64Updated 6 months ago
• Genentech / PerturbQA
  ☆28Updated last month
• songlab-cal / TraitGym
  ☆14Updated this week
• xCompass-AI / GeneCompass
  GeneCompass
  ☆92Updated 2 weeks ago
• genbio-ai / ModelGenerator
  AIDO.ModelGenerator is a software stack powering the development of an AI-driven Digital Organism (AIDO) by enabling researchers to adapt…
  ☆94Updated last month
• HannesStark / protein-localization
  Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…
  ☆72Updated 2 years ago