β46Sep 13, 2023Updated 2 years ago
Alternatives and similar repositories for DNAGPT
Users that are interested in DNAGPT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Large-Scale Dataset and Framework for Genomic Foundation Model Benchmarkingβ32Updated this week
- π₯π₯π₯ Latest Papers, Codes and Datasets on Large Biology Models!β26Nov 15, 2023Updated 2 years ago
- A Biological Foundation Model Bridging the Gap between Molecular Sequences Through Central Dogmaβ29Mar 11, 2025Updated last year
- β27Jun 5, 2025Updated last year
- [ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomeβ510Jan 1, 2026Updated 7 months ago
- Open source password manager - Proton Pass β’ AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- β13Jan 23, 2025Updated last year
- Repository for modeling PRO-cap data with the BPNet-like model, ProCapNet.β22Aug 28, 2025Updated 11 months ago
- A transformer model for DNA barcode representation learning and taxonomic classification.β17Aug 10, 2026Updated last week
- Benchmarking computational doublet-detection methods for single-cell RNA sequencing dataβ10Feb 25, 2021Updated 5 years ago
- β10Mar 19, 2020Updated 6 years ago
- DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genomeβ775Jan 22, 2026Updated 6 months ago
- Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyenaβ803Apr 22, 2025Updated last year
- β11Sep 27, 2024Updated last year
- π§ Deep generative models for TCR sequences π§β17Apr 4, 2022Updated 4 years ago
- End-to-end encrypted email - Proton Mail β’ AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- A lightweight reimplementation of some of the algorithms in the MEME suite in Python.β36Jun 3, 2026Updated 2 months ago
- Predicting immunogenic peptide recognized by TCR through ensemble deep learningβ18Apr 22, 2024Updated 2 years ago
- Perturb-seq analysis packageβ16May 2, 2024Updated 2 years ago
- An Interpretable Self-Attention Network with block-attention and attention-attribution.β12Sep 22, 2023Updated 2 years ago
- Library to extract embeddings for DNA sequences using BioFM genomics foundation modelβ21Aug 13, 2025Updated last year
- Single-cell biological network inference using a heterogeneous graph transformerβ78Feb 24, 2025Updated last year
- Foundation Models for Genomics & Transcriptomicsβ908Feb 24, 2026Updated 5 months ago
- DeepTACT: predicting three-dimensional chromatin contacts via bootstrapping deep learningβ20Jul 23, 2020Updated 6 years ago
- Single nucleotide variant (SNV) detection and genotyping algorithm for single-cell DNA sequencing dataβ14May 8, 2020Updated 6 years ago
- Open source password manager - Proton Pass β’ AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Bayesian Multi-Trait Multi-Environment for genomic selection[R package] [Dev version]β18Aug 6, 2023Updated 3 years ago
- Pipeline for processing of GoT-ChA genotyping data and downstream analysisβ15Mar 17, 2025Updated last year
- LLM for genomicβ14Feb 23, 2024Updated 2 years ago
- The SimSite3D Software tools are designed to quickly search a database of three dimensional structures, in Protein Data Bank format, withβ¦β11Oct 18, 2018Updated 7 years ago
- scAce: an adaptive embedding and clustering method for scRNA-seq dataβ12Sep 8, 2023Updated 2 years ago
- A deep learning model for protein subcellular localization based on immunohistochemistry imagesβ10Oct 12, 2019Updated 6 years ago
- SGQuant: Squeezing the Last Bit on Graph Neural Networks with Specialized Quantizationβ11Aug 12, 2020Updated 6 years ago
- Heterogeneous Causal Metapath Graph Neural Network for Gene-Microbe-Disease Association Predictionβ12Aug 19, 2024Updated last year
- β10Dec 14, 2016Updated 9 years ago
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- [ICML 2024] VQDNA: Unleashing the Power of Vector Quantization for Multi-Species Genomic Sequence Modelingβ10Sep 22, 2024Updated last year
- AncestralClustβ13Jul 9, 2025Updated last year
- β12Mar 17, 2023Updated 3 years ago
- [ICCAD 2025] Squantβ15Jul 3, 2025Updated last year
- Pan-cancer quantification of neoantigen-mediated immunoediting in cancer evolutionβ14May 4, 2022Updated 4 years ago
- This repository implements the winning solution for the single cell perturbation problemsβ16Dec 22, 2023Updated 2 years ago
- Biological Information Extraction from Large Language Models (LLMs) (Journal of Computational Biology 2025)β13Jun 18, 2025Updated last year