Reconstruct the three-dimensional structure of extrachromosomal DNA
☆14Sep 2, 2026Updated 2 months ago
Alternatives and similar repositories for ec3D
Users that are interested in ec3D are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A cross-platform method for chromatin contact normalization☆18Dec 29, 2025Updated 10 months ago
- ☆14Mar 28, 2025Updated last year
- A Python implementation for BH-FDR and HiCCUPS☆55Dec 29, 2025Updated 10 months ago
- CoRAL: Reconstruction of focal amplifications with long reads☆31Updated this week
- CIPHER: Covariance Inference for Perturbation and High-dimensional Expression Response☆13Oct 5, 2026Updated last month
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Analysis of epigenetic data in Python☆15Updated this week
- ☆16Sep 13, 2024Updated 2 years ago
- General analysis of HiC data, including compartment A/B, domains and loops.☆14Feb 17, 2023Updated 3 years ago
- Repository for the tutorials of STARNet, a computational framework designed to decipher spatially specific gene regulatory networks (GRNs…☆16Jun 9, 2026Updated 4 months ago
- ☆19Apr 14, 2024Updated 2 years ago
- ☆14Jan 20, 2026Updated 9 months ago
- 🍹This repo includes the scripts and analysis notebook for the Droplet Hi-C manuscript☆19Feb 6, 2026Updated 9 months ago
- Super-resolution chromatin tracing 2018☆19Nov 7, 2020Updated 6 years ago
- ☆21Apr 23, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆14Nov 3, 2023Updated 3 years ago
- ☆15Mar 29, 2024Updated 2 years ago
- EagleC2: Deep learning–powered discovery and screening of complex, fine-scale, and heterogeneity-defining structural variations from Hi-C…☆20Sep 21, 2026Updated last month
- Remote attestation framework for Fortanix EDP☆22Jan 11, 2021Updated 5 years ago
- ☆21Dec 15, 2023Updated 2 years ago
- ☆82Oct 26, 2026Updated last week
- Search for activating regulatory variants in the tumor genome☆15Apr 11, 2025Updated last year
- Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging☆15Jul 29, 2025Updated last year
- an efficient Hi-C data processing pipeline☆20Mar 26, 2024Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Code required to reproduce analysis of the single cell Cut and Tag data in the resource paper (Bartosovic et. al., 2020)☆16Apr 2, 2026Updated 7 months ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆30Apr 10, 2019Updated 7 years ago
- CALDER is a Hi-C analysis tool that allows: (1) compute chromatin domains from whole chromosome contacts; (2) derive their non-linear hie…☆29Jul 23, 2026Updated 3 months ago
- Scripts for analyzing ATAC-STARR data.☆10Feb 5, 2024Updated 2 years ago
- Computational suite for analyzing chromosomes and centromeres based on distance values between DNA motifs☆12Mar 5, 2026Updated 8 months ago
- SV clustering☆32Jul 5, 2021Updated 5 years ago
- Multi-omic study of luminal breast cancer☆11Sep 11, 2023Updated 3 years ago
- Pipeline for Universal Mapping of ATAC-seq☆29Sep 23, 2025Updated last year
- ☆13May 4, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Single cell manifold generator (SCMG)☆15Oct 22, 2026Updated 2 weeks ago
- A quickstart tool for AmpliconArchitect. Enables all steps (alignment, CNV calling, seed interval detection) prior to running AmpliconArc…☆89Oct 20, 2026Updated 2 weeks ago
- Metagenomics microbial abundance quantification☆28Sep 22, 2022Updated 4 years ago
- ☆24Jun 17, 2024Updated 2 years ago
- An easy-to-use Hi-C data processing software supporting distributed computation.☆66Jul 3, 2026Updated 4 months ago
- Micro DNA identification☆24Aug 5, 2021Updated 5 years ago
- computational tool to identify trasposable element insertions using Hi-C data☆10Sep 17, 2020Updated 6 years ago