EagleC2: Deep learning–powered discovery and screening of complex, fine-scale, and heterogeneity-defining structural variations from Hi-C data
☆19Sep 21, 2026Updated last month
Alternatives and similar repositories for EagleC2
Users that are interested in EagleC2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A cross-platform method for chromatin contact normalization☆18Dec 29, 2025Updated 10 months ago
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆78Oct 21, 2023Updated 3 years ago
- TADsplimer☆10Jun 24, 2021Updated 5 years ago
- Code to reproduce analyses in Kim et al. 2025☆10Dec 17, 2025Updated 10 months ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆79Jun 24, 2026Updated 4 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …☆13Dec 22, 2025Updated 10 months ago
- Genome-wide contact analysis using sklearn☆79Mar 23, 2024Updated 2 years ago
- ☆12Jul 24, 2026Updated 3 months ago
- TAD Calling using spectral clustering in R☆13Aug 21, 2026Updated 2 months ago
- Awesome list of HiC data analysing tools☆11May 3, 2023Updated 3 years ago
- Explore the Hi-Cs☆12Jul 25, 2026Updated 3 months ago
- Reconstruct the three-dimensional structure of extrachromosomal DNA☆14Sep 2, 2026Updated last month
- A toolkit for analyzing architectural stripes☆23Dec 1, 2024Updated last year
- StripePy recognizes architectural stripes in 3C and Hi-C contact maps using geometric reasoning☆13Oct 19, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Single-cell Hi-C data analysis toolbox☆28Aug 13, 2021Updated 5 years ago
- A graph neural network based approach to impute missing Hi-C reads.☆10Jul 28, 2023Updated 3 years ago
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆38Apr 1, 2025Updated last year
- ☆12Jan 18, 2023Updated 3 years ago
- Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…☆22Sep 17, 2026Updated last month
- ☆19Mar 8, 2023Updated 3 years ago
- mouse_fullStack_annotations☆16Jun 29, 2023Updated 3 years ago
- ☆11Aug 30, 2021Updated 5 years ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆122Jan 8, 2026Updated 9 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Code required to reproduce analysis of the single cell Cut and Tag data in the resource paper (Bartosovic et. al., 2020)☆16Apr 2, 2026Updated 6 months ago
- General analysis of HiC data, including compartment A/B, domains and loops.☆14Feb 17, 2023Updated 3 years ago
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆78Jul 22, 2025Updated last year
- HiC for copy Number variation and Translocation detection☆41Aug 4, 2021Updated 5 years ago
- Detecting differentially interacting genomic regions from Hi-C contact maps☆12Mar 11, 2024Updated 2 years ago
- Package for analysis and characterization of differential TADs☆27Aug 21, 2026Updated 2 months ago
- HiCtrans is a pipeline to call translocations from Hi-C data☆17Sep 27, 2021Updated 5 years ago
- Cooler demo using a Jupyter notebook Binder☆20Sep 24, 2020Updated 6 years ago
- Notes on single-cell Hi-C technologies, tools, and data☆89Jun 29, 2026Updated 4 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆13Jul 26, 2022Updated 4 years ago
- Tools for DLO HiC data analyze☆16Oct 31, 2022Updated 3 years ago
- A Python implementation for BH-FDR and HiCCUPS☆55Dec 29, 2025Updated 10 months ago
- Simple tools for working with Hi-C data☆20Dec 19, 2018Updated 7 years ago
- Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.☆16Apr 12, 2014Updated 12 years ago
- 🍹This repo includes the scripts and analysis notebook for the Droplet Hi-C manuscript☆19Feb 6, 2026Updated 8 months ago
- Architectural stripe detection from 3D genome conformation data☆18Sep 15, 2025Updated last year