A cross-platform method for chromatin contact normalization
☆16Dec 29, 2025Updated 9 months ago
Alternatives and similar repositories for Raichu
Users that are interested in Raichu are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Python implementation for BH-FDR and HiCCUPS☆55Dec 29, 2025Updated 9 months ago
- Genome-wide contact analysis using sklearn☆78Mar 23, 2024Updated 2 years ago
- EagleC2: Deep learning–powered discovery and screening of complex, fine-scale, and heterogeneity-defining structural variations from Hi-C…☆19Sep 21, 2026Updated 2 weeks ago
- An easy-to-use Hi-C data processing software supporting distributed computation.☆66Jul 3, 2026Updated 3 months ago
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆78Oct 21, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆45Aug 4, 2022Updated 4 years ago
- ☆14Mar 28, 2025Updated last year
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆38Apr 1, 2025Updated last year
- Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …☆14Dec 22, 2025Updated 9 months ago
- CALDER is a Hi-C analysis tool that allows: (1) compute chromatin domains from whole chromosome contacts; (2) derive their non-linear hie…☆28Jul 23, 2026Updated 2 months ago
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆79Jul 22, 2025Updated last year
- R package to evaluate the reproducibility of Hi-C data☆28Jun 23, 2023Updated 3 years ago
- ☆23Jul 27, 2023Updated 3 years ago
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆63Aug 28, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆43Jul 6, 2023Updated 3 years ago
- A Python implementation of the original DI domain caller☆14Aug 2, 2020Updated 6 years ago
- A toolkit for analyzing architectural stripes☆23Dec 1, 2024Updated last year
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Jan 18, 2021Updated 5 years ago
- Discovery of communities in Pore-C concatemers☆16Feb 12, 2025Updated last year
- Lightweight converter between hic and cool contact matrices.☆74Jul 15, 2024Updated 2 years ago
- R functions for very fast eigenvector calculation☆11Jan 18, 2023Updated 3 years ago
- FAN-C: Framework for the ANalysis of C-like data☆120Mar 13, 2024Updated 2 years ago
- FIREcaller: an R package for detecting frequently interacting re-gions from Hi-C data☆14Nov 4, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps☆71Sep 15, 2026Updated 3 weeks ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆44Jan 31, 2024Updated 2 years ago
- An Optimized Nested TAD caller for Hi-C data☆26Jun 30, 2021Updated 5 years ago
- ☆29Apr 23, 2025Updated last year
- Docker for 4DN Hi-C processing pipeline☆62Nov 26, 2024Updated last year
- A versatile tool to perform pile-up analysis on Hi-C data in .cool format.☆82Oct 31, 2024Updated last year
- GENome Organisation Visual Analytics☆16Dec 24, 2021Updated 4 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆52Apr 12, 2019Updated 7 years ago
- Super-resolution chromatin tracing 2018☆19Nov 7, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Allele-specific modeling of diploid Hi-C data☆12May 6, 2021Updated 5 years ago
- Algorithm to identify chromatin fountains☆22Apr 25, 2024Updated 2 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆72Nov 14, 2025Updated 10 months ago
- Genomics 3D Visualizer☆14Jun 14, 2024Updated 2 years ago
- Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation☆84Jan 24, 2025Updated last year
- Jupyter notebook based genomic data visualization toolkit.☆261Sep 22, 2026Updated 2 weeks ago
- A reference panel guided topological structure annotation of Hi-C data☆10Mar 23, 2023Updated 3 years ago