Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces.
☆33May 29, 2026Updated 2 months ago
Alternatives and similar repositories for u-shape3D
Users that are interested in u-shape3D are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The computational platform u-signal3D defines a shape-invariant representation of the spatial scales of molecular organization at the cel…☆11May 29, 2026Updated 2 months ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆19Jul 26, 2026Updated 2 weeks ago
- ☆23May 1, 2025Updated last year
- ☆12Jun 29, 2021Updated 5 years ago
- 4D reconstruction of developmental trajectories using spherical harmonics☆23Mar 25, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Process images using SimpleITK in napari☆23May 1, 2025Updated last year
- Spheroid models of morphogenesis for the GPU.☆46Oct 12, 2025Updated 9 months ago
- a free, open-source web app for annotating, training, and evaluating image understanding algorithms☆25Nov 23, 2021Updated 4 years ago
- Java library for scientific image computing☆16Feb 4, 2021Updated 5 years ago
- CUDA-accelerated 3D BioImage Computing (ICCV BIC 2025)☆31Jul 30, 2026Updated last week
- Simulation platform of animal embryogenesis☆21Jun 19, 2022Updated 4 years ago
- Python module for registering and fusing multi-view microscopy data☆24Mar 8, 2025Updated last year
- scalable multiscale image pyramids in python☆29Updated this week
- Multiple-particle tracking designed to (1) track dense particle fields, (2) close gaps in particle trajectories resulting from detection …☆55May 29, 2026Updated 2 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆14Jan 27, 2024Updated 2 years ago
- ☆21Sep 9, 2021Updated 4 years ago
- Resources for teaching/preparing to teach bioimage analysis☆63Updated this week
- python tools for BigDataViewer☆23Jul 2, 2026Updated last month
- SLM binary mask generator for Lattice Light Sheet microscopy☆12Dec 2, 2021Updated 4 years ago
- Easy Volumetric Segmentation with Deep Learning☆30Mar 30, 2026Updated 4 months ago
- ☆15Feb 5, 2025Updated last year
- Python libraries for loading, running and packaging bioimage.io models☆39Updated this week
- navigate - open source light-sheet microscope controls☆40Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Compute a 2D embedding of a data matrix given supervised class information.☆12Dec 8, 2019Updated 6 years ago
- Fiji macro for cutting confocal stacks at various depths relative to surface signal☆10Sep 28, 2020Updated 5 years ago
- Visualise brainreg registration output☆10Nov 20, 2021Updated 4 years ago
- CuPy implementations of image and signal processing functions from NumPy, SciPy and scikit-image☆46Jul 20, 2021Updated 5 years ago
- ☆14Jan 25, 2024Updated 2 years ago
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆20Aug 10, 2023Updated 3 years ago
- Modern Bio-Formats wrapper with clean lazy Python API☆23Jun 25, 2026Updated last month
- ☆21Aug 17, 2023Updated 2 years ago
- This is a repository of IAMSAM, an image-based ST analysis tool☆22Jun 24, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Automated 3D brain registration in napari with support for multiple species and atlases.☆16Jan 5, 2024Updated 2 years ago
- GPU-accelerated image processing using CLIJ via pyimagej in python☆10Jan 8, 2021Updated 5 years ago
- Accelerated Pixel and Object Classifiers (APOC)☆62Apr 24, 2026Updated 3 months ago
- A web application for classifying objects☆29Nov 23, 2021Updated 4 years ago
- Napari plugin for vollseg☆14Jul 16, 2025Updated last year
- Image reading, metadata management, and image writing for Microscopy images in Python☆126Updated this week
- ☆10Aug 22, 2020Updated 5 years ago