Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces.
☆33Oct 1, 2026Updated 3 weeks ago
Alternatives and similar repositories for u-shape3D
Users that are interested in u-shape3D are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The computational platform u-signal3D defines a shape-invariant representation of the spatial scales of molecular organization at the cel…☆11Oct 1, 2026Updated 3 weeks ago
- ☆24May 1, 2025Updated last year
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆19Jul 26, 2026Updated 3 months ago
- Simulation platform of animal embryogenesis☆22Jun 19, 2022Updated 4 years ago
- Transform 3D cell surfaces into different representations including topographic maps, 3D spheres, and 2D images for doing optimized quant…☆38Aug 6, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆12Jun 29, 2021Updated 5 years ago
- 4D reconstruction of developmental trajectories using spherical harmonics☆23Mar 25, 2025Updated last year
- Python tools for MoBIE☆10Jul 3, 2026Updated 3 months ago
- Process images using SimpleITK in napari☆23May 1, 2025Updated last year
- Reliable estimation of membrane curvature for cryo-electron tomography☆22Jun 19, 2026Updated 4 months ago
- Java library for scientific image computing☆16Feb 4, 2021Updated 5 years ago
- CUDA-accelerated 3D BioImage Computing (ICCV BIC 2025)☆31Oct 7, 2026Updated 3 weeks ago
- Spheroid models of morphogenesis for the GPU.☆46Oct 12, 2025Updated last year
- a free, open-source web app for annotating, training, and evaluating image understanding algorithms☆25Nov 23, 2021Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Lattice light-sheet post-processing utility.☆30Oct 5, 2026Updated 3 weeks ago
- Python module for registering and fusing multi-view microscopy data☆23Mar 8, 2025Updated last year
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Aug 13, 2021Updated 5 years ago
- ☆21Sep 9, 2021Updated 5 years ago
- scalable multiscale image pyramids in python☆29Aug 5, 2026Updated 2 months ago
- Annotation of filaments and other curvilinear structures in 3D.☆12Oct 9, 2023Updated 3 years ago
- Python based viewer for large mulit-dimensional datasets.☆20Jan 28, 2020Updated 6 years ago
- Multiple-particle tracking designed to (1) track dense particle fields, (2) close gaps in particle trajectories resulting from detection …☆56Oct 1, 2026Updated 3 weeks ago
- ☆14Jan 27, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- SLM binary mask generator for Lattice Light Sheet microscopy☆12Dec 2, 2021Updated 4 years ago
- CuPy implementations of image and signal processing functions from NumPy, SciPy and scikit-image☆46Jul 20, 2021Updated 5 years ago
- A list of awesome bioimage analysis challenges☆10Feb 1, 2022Updated 4 years ago
- python tools for BigDataViewer☆23Jul 2, 2026Updated 3 months ago
- Easy Volumetric Segmentation with Deep Learning☆31Mar 30, 2026Updated 7 months ago
- Resources for teaching/preparing to teach bioimage analysis☆65Oct 16, 2026Updated 2 weeks ago
- Track and lineage visualization with btrack and Napari☆46Sep 29, 2025Updated last year
- Image registration and ROI matching for microscopy images using nuclei constellations☆17Updated this week
- Python package to infer tensions and pressures from 3D microscopy images of embryos and tissues☆16Oct 17, 2026Updated last week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Pure Python library for reading NIS Elements ND2 images and metadata☆10Apr 28, 2017Updated 9 years ago
- ClearVolume is a real-time live 3D visualization library designed for high-end volumetric microscopes such as SPIM and DLSM microscopes. …☆48Jun 11, 2026Updated 4 months ago
- Image registration (alignment) software for large microscopy images☆27Oct 15, 2023Updated 3 years ago
- Fiji macro for cutting confocal stacks at various depths relative to surface signal☆10Sep 28, 2020Updated 6 years ago
- ☆17Jul 30, 2024Updated 2 years ago
- Compute a 2D embedding of a data matrix given supervised class information.☆12Dec 8, 2019Updated 6 years ago
- ☆15Feb 5, 2025Updated last year