DanuserLab / u-shape3D
Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces.
☆28Updated this week
Related projects ⓘ
Alternatives and complementary repositories for u-shape3D
- 4D reconstruction of developmental trajectories using spherical harmonics☆19Updated 11 months ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated 2 weeks ago
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆14Updated 2 months ago
- AICS Segmentation (One-Way) Mirror☆45Updated 3 years ago
- Guides and code for 3D nuclear instance segmentation☆19Updated this week
- A platform for compiling, analyzing, and exploring tracking data☆42Updated 3 weeks ago
- Gamified image segmentation quality estimation☆17Updated 2 years ago
- ☆20Updated 3 weeks ago
- Process images using SimpleITK in napari☆19Updated last month
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆33Updated 3 weeks ago
- ☆19Updated last year
- MethodsJ2☆14Updated 2 years ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 3 months ago
- MorphoFeatures code and data☆18Updated last year
- A multi-dimensional spatial image data structure for scientific Python.☆37Updated 4 months ago
- Track and lineage visualization with btrack and Napari☆45Updated 3 weeks ago
- ☆37Updated 4 months ago
- A plugin to visualise 3D spatial single cell omics☆21Updated 7 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆39Updated 3 weeks ago
- Accelerated Pixel and Object Classifiers (APOC)☆51Updated last year
- The repository of NEUBIAS textbook 2021☆10Updated 2 years ago
- Easily read and write ome-tiff images in python☆26Updated 6 months ago
- Lectures for a napari training course☆50Updated last year
- Interactive surface analysis in napari for bio-mechanical stress measurement☆18Updated this week
- Napari Visualization tool for Trackmate > 6.0 and bTrackmate XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆16Updated this week
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Updated last year
- Tools and scripts for EASI-FISH image data analysis☆17Updated 2 years ago
- A napari plugin for clustering objects according to their properties.☆81Updated this week
- Whole slide image registration through wsireg in napari.☆12Updated last year
- Imagej toolset to ease hyperstacks visualization and handling☆22Updated last month