Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces.
☆33Mar 12, 2026Updated 3 weeks ago
Alternatives and similar repositories for u-shape3D
Users that are interested in u-shape3D are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The computational platform u-signal3D defines a shape-invariant representation of the spatial scales of molecular organization at the cel…☆11Mar 12, 2026Updated 3 weeks ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆18Mar 30, 2026Updated last week
- ☆22May 1, 2025Updated 11 months ago
- Transform 3D cell surfaces into different representations including topographic maps, 3D spheres, and 2D images for doing optimized quant…☆36Aug 25, 2025Updated 7 months ago
- 4D reconstruction of developmental trajectories using spherical harmonics☆23Mar 25, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆12Jun 29, 2021Updated 4 years ago
- Process images using SimpleITK in napari☆23May 1, 2025Updated 11 months ago
- Spheroid models of morphogenesis for the GPU.☆46Oct 12, 2025Updated 5 months ago
- Python module for registering and fusing multi-view microscopy data☆24Mar 8, 2025Updated last year
- Simulation platform of animal embryogenesis☆21Jun 19, 2022Updated 3 years ago
- scalable multiscale image pyramids in python☆29Jul 25, 2024Updated last year
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Aug 13, 2021Updated 4 years ago
- Multiple-particle tracking designed to (1) track dense particle fields, (2) close gaps in particle trajectories resulting from detection …☆52Mar 12, 2026Updated 3 weeks ago
- Resources for teaching/preparing to teach bioimage analysis☆58Mar 25, 2026Updated 2 weeks ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆21Sep 9, 2021Updated 4 years ago
- ☆13Jan 27, 2024Updated 2 years ago
- Easy Volumetric Segmentation with Deep Learning☆28Mar 30, 2026Updated last week
- a free, open-source web app for annotating, training, and evaluating image understanding algorithms☆25Nov 23, 2021Updated 4 years ago
- python tools for BigDataViewer☆22Dec 29, 2024Updated last year
- Python libraries for loading, running and packaging bioimage.io models☆35Updated this week
- CUDA-accelerated 3D BioImage Computing (ICCV BIC 2025)☆29Apr 3, 2026Updated last week
- Visualise brainreg registration output☆10Nov 20, 2021Updated 4 years ago
- ☆15Feb 5, 2025Updated last year
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Java library for scientific image computing☆16Feb 4, 2021Updated 5 years ago
- Fiji macro for cutting confocal stacks at various depths relative to surface signal☆10Sep 28, 2020Updated 5 years ago
- navigate - open source light-sheet microscope controls☆38Apr 3, 2026Updated last week
- ☆14Jan 25, 2024Updated 2 years ago
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆20Aug 10, 2023Updated 2 years ago
- Automated 3D brain registration in napari with support for multiple species and atlases.☆16Jan 5, 2024Updated 2 years ago
- ☆22Aug 17, 2023Updated 2 years ago
- GPU-accelerated image processing using CLIJ via pyimagej in python☆10Jan 8, 2021Updated 5 years ago
- SLM binary mask generator for Lattice Light Sheet microscopy☆12Dec 2, 2021Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Accelerated Pixel and Object Classifiers (APOC)☆61Jul 18, 2025Updated 8 months ago
- ImageJ plugin for building figures☆16Sep 13, 2023Updated 2 years ago
- Napari plugin for vollseg☆14Jul 16, 2025Updated 8 months ago
- A set of Qt-based widgets onto the pymmcore-plus model☆21Updated this week
- Lattice light-sheet post-processing utility.☆30Updated this week
- Python bindings for scalar and vectorial models of the 3D microscope point spread function.☆54May 20, 2024Updated last year
- A python and C++ library for reading and writing neuronal morphologies☆28Feb 26, 2025Updated last year