imyiningliu / cellstitch
☆10Updated last year
Alternatives and similar repositories for cellstitch:
Users that are interested in cellstitch are comparing it to the libraries listed below
- Accurate and efficient spot detection for microscopy data☆70Updated this week
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆26Updated 3 months ago
- ☆46Updated 4 months ago
- Process and analyze surfaces using vedo in napari.☆24Updated 9 months ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 2 weeks ago
- ☆12Updated 9 months ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆74Updated 2 weeks ago
- "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…☆15Updated last year
- A napari plugin for clustering objects according to their properties.☆82Updated 2 weeks ago
- Course and exercises on deep learning for microscopy image analysis☆14Updated 11 months ago
- Particle tracking by solving linear assignment problem.☆49Updated this week
- ☆68Updated 2 months ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 3 months ago
- Track and lineage visualization with btrack and Napari☆45Updated 4 months ago
- Browse your OMERO database from within napari.☆35Updated this week
- ☆22Updated 6 months ago
- napari plugin for trackastra☆13Updated 4 months ago
- Multi-Object Tracker using Integer Linear Equations☆29Updated last month
- Multiple file format reading directly into napari using pure Python☆35Updated 7 months ago
- Guides and code for 3D nuclear instance segmentation☆20Updated last month
- A tool for manual pointwise deformable registration using bigdataviewer.☆27Updated 2 weeks ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆66Updated 5 months ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆25Updated 8 months ago
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆18Updated last year
- A module with convenience functions for writing Python code that interacts with OMERO.☆41Updated 4 months ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆12Updated 2 weeks ago
- A platform for compiling, analyzing, and exploring tracking data☆43Updated this week
- ☆16Updated 2 weeks ago
- Python libraries for loading, running and packaging bioimage.io models☆30Updated this week
- Napari Visualization tool for Trackmate > 6.0 and bTrackmate XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆16Updated this week