Alternatives and similar repositories for cellstitch

Users that are interested in cellstitch are comparing it to the libraries listed below

• DanuserLab / u-segment3D
  Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with ou…
  ☆43Updated 3 weeks ago
• bioio-devs / bioio
  Image reading, metadata management, and image writing for Microscopy images in Python
  ☆109Updated last week
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆87Updated last week
• weigertlab / spotiflow
  Accurate and efficient spot detection for microscopy data
  ☆111Updated last week
• haesleinhuepf / napari-process-points-and-surfaces
  Process and analyze surfaces using vedo in napari.
  ☆25Updated last year
• COSC-Lab / napari-fast4dreg
  dask empowered fast4dreg
  ☆15Updated last year
• haesleinhuepf / devbio-napari
  ☆51Updated 7 months ago
• multiview-stitcher / multiview-stitcher
  A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.
  ☆95Updated this week
• BIOP / ijp-kheops
  ☆20Updated last month
• haesleinhuepf / napari-segment-blobs-and-things-with-membranes
  A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…
  ☆30Updated 7 months ago
• rosalindfranklininstitute / RedLionfish
  ☆36Updated last year
• BiAPoL / PoL-BioImage-Analysis-TS-GPU-Accelerated-Image-Analysis
  PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track
  ☆28Updated last year
• tlambert03 / microsim
  ☆42Updated last week
• NEUBIAS / Defragmentation_TrainingSchool_EOSC-Life_2022
  "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…
  ☆15Updated 2 years ago
• napari / napari-plugin-template
  A template repo used to make new napari plugins
  ☆29Updated last week
• AllenCellModeling / napari-aicsimageio
  Multiple file format reading directly into napari using pure Python
  ☆39Updated last month
• maweigert / spotipy
  ☆12Updated last year
• peng-lab / BaSiCPy
  ☆91Updated last month
• computational-cell-analytics / dl-for-micro
  Course and exercises on deep learning for microscopy image analysis
  ☆21Updated 2 weeks ago
• napari / napari-animation
  A napari plugin for making animations
  ☆89Updated last week
• weigertlab / trackastra
  Transformer-based cell tracking for live-cell microscopy
  ☆112Updated 3 weeks ago
• AnniekStok / napari-segmentation-toolbox
  A basis for a napari plugin for manually correcting cell segmentation in 3D (z, y, x) or 4D (t, z, y, x) (virtual) arrays.
  ☆10Updated last week
• baigouy / EPySeg
  ☆21Updated last year
• GuignardLab / tapenade
  ☆13Updated 2 weeks ago
• RoccoDAnt / napari-zelda
  ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari
  ☆24Updated 2 weeks ago
• Euro-BioImaging / EuBI-Bridge
  A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processi…
  ☆17Updated 2 weeks ago
• fmi-basel / LSTree
  LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.
  ☆20Updated 2 years ago
• uhlmanngroup / splinedist
  SplineDist: Automated Cell Segmentation with Spline Curves
  ☆69Updated last year
• UU-cellbiology / BigTrace
  FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets
  ☆29Updated 2 weeks ago
• tlambert03 / napari-omero
  Browse your OMERO database from within napari.
  ☆39Updated last week