☆14Jan 27, 2024Updated 2 years ago
Alternatives and similar repositories for cellstitch
Users that are interested in cellstitch are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Accelerated CellStitch for 3D labeling of anisotropic image stacks☆15Mar 1, 2026Updated 6 months ago
- Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with ou…☆78Aug 25, 2026Updated last week
- ☆15Apr 1, 2026Updated 5 months ago
- 4D reconstruction of developmental trajectories using spherical harmonics☆23Mar 25, 2025Updated last year
- ☆24May 1, 2025Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A collection of useful python utilities from True North Intelligent Algorithms☆46Updated this week
- dask empowered fast4dreg☆17Mar 11, 2026Updated 5 months ago
- Interprocess environment manager 🧊☆17May 11, 2026Updated 3 months ago
- Teaching materials and outline for the Pasteur Bioimage Analysis vour☆17Jun 2, 2025Updated last year
- Segment images utilizing pre-trained neural networks as feature extractors☆52Jul 3, 2026Updated 2 months ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Dec 9, 2025Updated 8 months ago
- ☆32Jul 31, 2025Updated last year
- Automated batch processing of cell and tissue microscopy image data in Napari☆22Updated this week
- Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…☆23Apr 10, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆11Jun 29, 2021Updated 5 years ago
- Modern Bio-Formats wrapper with clean lazy Python API☆23Jun 25, 2026Updated 2 months ago
- Guides and code for 3D nuclear instance segmentation☆23Dec 2, 2025Updated 9 months ago
- A tool for cell instance aware segmentation in densely packed 3D volumetric images☆130Aug 3, 2026Updated last month
- A recast of cell segmentation models built on the Burn deep learning framework.☆23Aug 14, 2026Updated 3 weeks ago
- MorphoFeatures code and data☆23Aug 31, 2026Updated last week
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆44Mar 2, 2025Updated last year
- A JupyterBook site for napari workshop materials☆10Jul 11, 2022Updated 4 years ago
- Paint segmentations directly to on-disk/remote zarr arrays☆16Mar 25, 2026Updated 5 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆32May 12, 2026Updated 3 months ago
- Browse, share, and publish OME-Zarr data☆29Updated this week
- A python extension for the automatic alignment of a source image or a stack (movie) to a target image/reference frame.☆98Oct 20, 2024Updated last year
- Graph-based framework to manipulate and analyze cell lineages from cell tracking data☆24Updated this week
- 📱iOS real-time messenger, Location base Hangouts Network☆11Apr 5, 2021Updated 5 years ago
- ☆10Updated this week
- CUDA-accelerated 3D BioImage Computing (ICCV BIC 2025)☆31Jul 30, 2026Updated last month
- The computational platform u-signal3D defines a shape-invariant representation of the spatial scales of molecular organization at the cel…☆11May 29, 2026Updated 3 months ago
- Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…☆33May 29, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Calculation of the Ripley K (spatial statistics) value in python☆13Sep 29, 2025Updated 11 months ago
- The Déjà Vu programming language☆15Aug 12, 2014Updated 12 years ago
- BioTuring Cell Segmentation☆15Mar 19, 2025Updated last year
- Rayray is a baby ray tracer written in C++.☆18Aug 29, 2019Updated 7 years ago
- Scatterbar - data visualization for proportional data across many spatially resolved coordinates☆13Mar 3, 2025Updated last year
- [NeurIPS 2023] Semantic segmentation of sparse irregular point clouds for leaf/wood discrimination☆12Jun 18, 2025Updated last year
- Python utility and library for converting Nikon .nd2 files to pyramidal OME TIFF.☆13May 13, 2022Updated 4 years ago