imyiningliu / cellstitchLinks
☆10Updated last year
Alternatives and similar repositories for cellstitch
Users that are interested in cellstitch are comparing it to the libraries listed below
Sorting:
- Accurate and efficient spot detection for microscopy data☆76Updated last week
- Course and exercises on deep learning for microscopy image analysis☆17Updated this week
- Process and analyze surfaces using vedo in napari.☆24Updated last year
- dask empowered fast4dreg☆11Updated 6 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆26Updated last month
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 3 months ago
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆18Updated last year
- ☆49Updated last month
- A napari plugin for clustering objects according to their properties.☆85Updated last week
- "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…☆15Updated 2 years ago
- ☆12Updated last year
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated last month
- Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with ou…☆17Updated 2 months ago
- ☆16Updated 3 months ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 6 months ago
- Multiple file format reading directly into napari using pure Python☆36Updated 10 months ago
- Guides and code for 3D nuclear instance segmentation☆22Updated last month
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆26Updated last year
- ☆33Updated last week
- Automated mitochondrial segmentation and tracking.☆32Updated 3 years ago
- Browse your OMERO database from within napari.☆37Updated this week
- ☆72Updated 2 weeks ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆88Updated 2 weeks ago
- Track and lineage visualization with btrack and Napari☆45Updated 7 months ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 3 years ago
- Development of PICASSO plugin for napari☆17Updated 2 years ago
- A minimal Python package for reading OME-Zarr (meta)data☆29Updated this week
- A template repo used to make new napari plugins☆23Updated 3 weeks ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated 2 months ago
- ☆81Updated 2 months ago