imyiningliu / cellstitchLinks
☆12Updated last year
Alternatives and similar repositories for cellstitch
Users that are interested in cellstitch are comparing it to the libraries listed below
Sorting:
- Accurate and efficient spot detection for microscopy data☆100Updated last week
- Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with ou…☆22Updated last month
- ☆20Updated 2 months ago
- dask empowered fast4dreg☆12Updated 10 months ago
- ☆51Updated 5 months ago
- A napari plugin for clustering objects according to their properties.☆87Updated last week
- Cell tracking and segmentation software☆147Updated this week
- Image reading, metadata management, and image writing for Microscopy images in Python☆102Updated this week
- ☆40Updated this week
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆84Updated last week
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Updated last year
- ☆85Updated 6 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆29Updated 5 months ago
- A napari plugin for making animations☆88Updated this week
- Particle tracking by solving linear assignment problem.☆57Updated last week
- Process and analyze surfaces using vedo in napari.☆24Updated last year
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆81Updated 3 weeks ago
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆20Updated 2 years ago
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆86Updated 3 weeks ago
- Course and exercises on deep learning for microscopy image analysis☆18Updated 3 months ago
- ☆12Updated last year
- ☆34Updated last year
- ☆21Updated last year
- Transformer-based cell tracking for live-cell microscopy☆94Updated last week
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆30Updated 2 weeks ago
- A basis for a napari plugin for manually correcting cell segmentation in 3D (z, y, x) or 4D (t, z, y, x) (virtual) arrays.☆11Updated last week
- Automated mitochondrial segmentation and tracking.☆32Updated 4 years ago
- Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction☆69Updated last month
- Multiple file format reading directly into napari using pure Python☆37Updated last year
- SplineDist: Automated Cell Segmentation with Spline Curves☆68Updated last year