simonguld / CellSegmentationTrackerLinks
A Python module intended to make cell segmentation, tracking and subsequent (mostly biophysical) statisticial analysis easy
☆15Updated 2 months ago
Alternatives and similar repositories for CellSegmentationTracker
Users that are interested in CellSegmentationTracker are comparing it to the libraries listed below
Sorting:
- python library for particles tracking in 2D+t and 3D+t scientific images☆15Updated last year
- ExTrack MLE for diffusive noisy single-particle tracks☆13Updated last month
- A platform for compiling, analyzing, and exploring tracking data☆45Updated 3 months ago
- Course and exercises on deep learning for microscopy image analysis☆19Updated 2 weeks ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated 2 months ago
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆80Updated 2 months ago
- Interactive, particle-based physics, chemistry and biology modeling and simulation environment☆23Updated this week
- A napari plugin for clustering objects according to their properties.☆87Updated this week
- Cell tracking and segmentation software☆118Updated last week
- An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.☆70Updated last week
- Guides and code for 3D nuclear instance segmentation☆22Updated this week
- A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation☆28Updated last month
- Website for the BioImage Model zoo -- a model zoo for bioimage analysis.☆60Updated 3 months ago
- Interactive visualization and sharing of cell tracking data in the browser☆28Updated 2 weeks ago
- Morphometrics for Membrane Surfaces Segmented from Cryo-ET or other volumetric imaging.☆24Updated this week
- ☆10Updated 3 years ago
- ☆12Updated 2 years ago
- Use ImageJ functionality from napari☆31Updated 3 months ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆65Updated 3 weeks ago
- MiC is an ImageJ plugin to compare segmentation masks☆19Updated 3 weeks ago
- ☆39Updated 11 months ago
- GPU-accelerated general purpose image processing and image analysis in napari☆35Updated last month
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆75Updated this week
- Single-cell fluorescence microscopy data analysis☆26Updated 3 years ago
- Machine Learning in Scanning Transmission Electron Microscopy Workshop 2024☆20Updated last year
- Track and lineage visualization with btrack and Napari☆45Updated 8 months ago
- Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools a…☆142Updated this week
- Loading and handling microscopy data in blender☆120Updated last month
- ☆16Updated 2 years ago
- Resources for teaching/preparing to teach bioimage analysis☆58Updated this week