simonguld / CellSegmentationTrackerLinks
A Python module intended to make cell segmentation, tracking and subsequent (mostly biophysical) statisticial analysis easy
☆16Updated 4 months ago
Alternatives and similar repositories for CellSegmentationTracker
Users that are interested in CellSegmentationTracker are comparing it to the libraries listed below
Sorting:
- Website for the BioImage Model zoo -- a model zoo for bioimage analysis.☆60Updated 2 months ago
- 4D reconstruction of developmental trajectories using spherical harmonics☆23Updated 5 months ago
- A platform for compiling, analyzing, and exploring tracking data☆47Updated 2 weeks ago
- Resources for teaching/preparing to teach bioimage analysis☆58Updated last week
- ExTrack MLE for diffusive noisy single-particle tracks☆14Updated last month
- MiC is an ImageJ plugin to compare segmentation masks☆19Updated 3 months ago
- The ImageJ plugin to run deep-learning models☆98Updated last month
- Process images using SimpleITK in napari☆21Updated 4 months ago
- Accelerated Pixel and Object Classifiers (APOC)☆56Updated last month
- Material to showcase and test several tools and packages releated to ZEN, CZI image files and python packages related to those topics☆17Updated 2 months ago
- Microscopy Image Browser version 2 is a package for image processing, segmentation and visualization of multi-dimensional (2D-4D) microsc…☆35Updated 3 months ago
- Discover, install, and share napari plugins☆52Updated this week
- MorphoFeatures code and data☆21Updated 2 years ago
- Cell tracking and segmentation software☆134Updated this week
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated 3 weeks ago
- ☆22Updated 2 years ago
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆17Updated last month
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 4 months ago
- Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…☆29Updated 4 months ago
- ☆27Updated last week
- Read Olympus image files (OIF and OIB).☆13Updated 3 months ago
- Python package to export tensorflow models as DeepImageJ bundled models☆17Updated 3 years ago
- Create 3D/4D animations using a natural language-based syntax☆60Updated 2 months ago
- Guides and code for 3D nuclear instance segmentation☆22Updated 2 months ago
- 3D shape analysis using deep learning☆26Updated last year
- Use ImageJ functionality from napari☆31Updated last week
- BIA Bob is a Jupyter+LLM-based assistant for interacting with image data and for working on Bio-image Analysis tasks.☆120Updated 3 weeks ago
- GPU-accelerated image processing for everyone☆54Updated last year
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆77Updated 5 months ago
- Linking napari layers with Matplotlib plots☆41Updated last month