Alternatives and similar repositories for tissue_miner

Users that are interested in tissue_miner are comparing it to the libraries listed below

• hms-dbmi / brainmapr
  R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data …
  ☆16Updated 10 years ago
• JEFworks-Lab / MERmaid
  WebGL-based viewer for spatially-resolved transcriptomics data
  ☆28Updated 2 years ago
• broadchenf / Slideseq
  ☆11Updated 6 years ago
• theislab / interactive_plotting
  ☆22Updated 5 years ago
• SpatialTranscriptomicsResearch / st_viewer
  A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets
  ☆15Updated 4 years ago
• blaineylab / OpticalPooledScreens
  ☆13Updated 2 years ago
• alexandrovteam / SpaceM
  ☆15Updated last year
• nolanlab / vortex
  VorteX Clustering Environment - Java graphical tool for single-cell analysis, clustering and visualization. Latest release:
  ☆34Updated 2 years ago
• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆28Updated 11 months ago
• fmi-basel / glib-nature2018-materials
  Image Processing Package for the Paper "Self-organization and symmetry breaking in intestinal organoid development"
  ☆11Updated 4 years ago
• camlab-bioml / astir
  astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
  ☆55Updated 3 months ago
• YosefLab / FastProject
  Dimensionality reduction for single cell RNA-seq data
  ☆36Updated 5 years ago
• TaylorResearchLab / scedar
  Single-cell exploratory data analysis for RNA-Seq
  ☆40Updated 4 years ago
• BodenmillerGroup / imctools
  Tools to handle IMC data
  ☆23Updated 3 years ago
• hubmapconsortium / spatial-transcriptomics-pipeline
  ☆29Updated last year
• czbiohub-sf / scRFE
  Single-cell identity definition using random forest modelling and recursive feature elimination
  ☆12Updated 5 years ago
• linnarsson-lab / pysmFISH
  Analysis of smFISH data
  ☆11Updated 7 years ago
• reimandlab / ActiveDriverDB
  ActiveDriverDB
  ☆12Updated 2 years ago
• broadinstitute / scRNA-Seq
  ☆12Updated 2 years ago
• ggirelli / iFISH-probe-design
  iFISH Probe Design: a Python3 package to build iFISH probes.
  ☆12Updated 3 years ago
• nf-core / mcmicro
  An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.
  ☆22Updated this week
• normjam / benchmark
  Comparison of single-cell normalization methods using multiple datasets with ground-truth labels
  ☆19Updated 5 years ago
• feldman4 / OpticalPooledScreens_2019
  Examples and code for optical pooled screens
  ☆10Updated 2 years ago
• swoodhouse / SCNS-Toolkit
  Single cell network synthesis toolkit
  ☆23Updated 4 years ago
• fabilab / northstar
  Single cell type annotation guided by cell atlases, with freedom to be queer
  ☆25Updated 3 years ago
• mzwiessele / topslam
  manifold metric and correction techniques for (Bayesian) GPLVM from GPy
  ☆12Updated 5 years ago
• canzarlab / JVis-learn
  ☆20Updated 4 years ago
• GuignardLab / napari-sc3D-viewer
  A plugin to visualise 3D spatial single cell omics
  ☆21Updated 3 months ago
• merfishtools / merfishtools
  MERFISHTools implement a Bayesian framework for accurately predicting gene or transcript expression from MERFISH data. On top, they provi…
  ☆14Updated 6 years ago
• theislab / pseudodynamics
  Dynamic models for single-cell RNA-seq time series.
  ☆40Updated 7 years ago