mpicbg-scicomp / tissue_minerLinks
A toolkit to quantify cell dynamics in living tissues
☆12Updated 7 years ago
Alternatives and similar repositories for tissue_miner
Users that are interested in tissue_miner are comparing it to the libraries listed below
Sorting:
- ☆15Updated last year
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆29Updated 6 months ago
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆15Updated 4 years ago
- WebGL-based viewer for spatially-resolved transcriptomics data☆28Updated 2 years ago
- An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.☆27Updated 3 weeks ago
- ☆29Updated last year
- Predicting Cell Health with Morphological Profiles☆39Updated 3 years ago
- ☆11Updated 6 years ago
- The complete FlowSOM package known from R, now available in Python!☆24Updated last week
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆56Updated 5 months ago
- ☆30Updated last year
- ☆15Updated 3 years ago
- A plugin to visualise 3D spatial single cell omics☆20Updated last month
- ☆22Updated 5 years ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆39Updated 2 months ago
- VorteX Clustering Environment - Java graphical tool for single-cell analysis, clustering and visualization. Latest release:☆34Updated 2 years ago
- Python API and Jupyter widget for Vitessce☆59Updated last month
- Tools to handle IMC data☆24Updated 3 years ago
- R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data …☆16Updated 10 years ago
- Image Processing Package for the Paper "Self-organization and symmetry breaking in intestinal organoid development"☆11Updated 5 years ago
- Fast reconstruction of spatial networks from bioimages.☆25Updated 7 months ago
- Graph-based Decoding for In Situ Sequencing☆10Updated 5 years ago
- Analysis of smFISH data☆11Updated 7 years ago
- Spatial RNA velocity☆10Updated last year
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Updated 4 years ago
- Methods for Image-Based Cell Profiling☆51Updated last year
- Minimum Information about Tissue Imaging☆21Updated 2 years ago
- MERFISHTools implement a Bayesian framework for accurately predicting gene or transcript expression from MERFISH data. On top, they provi…☆14Updated 6 years ago
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 4 years ago
- Dimensionality reduction for single cell RNA-seq data☆36Updated 5 years ago