Alternatives and similar repositories for SHAPR

Users that are interested in SHAPR are comparing it to the libraries listed below

• bowang-lab / MAESTER
  Masked Autoencoder Guided Segmentation at Pixel Resolution
  ☆16Updated 2 years ago
• xulabs / aitom
  AI for tomography
  ☆150Updated last year
• marrlab / DISPR
  A Diffusion Model Predicts 3D Shapes from 2D Microscopy Images
  ☆37Updated 2 years ago
• HealthML / ContIG
  This is the official implementation of the method ContIG, for self-supervised learning from medical imaging with genomics
  ☆57Updated 3 years ago
• jocpae / VesselGraph
  ☆121Updated 6 months ago
• marrlab / SHAPR_torch
  SHAPR: Code for "Capturing Shape Information with Multi-Scale Topological Loss Terms for 3D Reconstruction"
  ☆41Updated 2 years ago
• JamesClough / topograd
  Topological Priors for Image segmentation
  ☆44Updated 5 years ago
• HuXiaoling / awesome-topology-driven-image-analysis
  awesome-topology-driven-deep-image-analysis
  ☆39Updated 3 weeks ago
• HuXiaoling / DMT_loss
  DMT codes for the ICLR 2021 paper: Topology-Aware Segmentation Using Discrete Morse Theory
  ☆48Updated 2 years ago
• tuffr5 / Saner-deep-registration
  ☆11Updated 2 years ago
• histocartography / patho-quant-explainer
  Code for replicating results presented in the paper: "Quantifying Explainers of Graph Neural Networks in Computational Pathology"
  ☆45Updated 4 years ago
• xinglab-ai / mda
  Revealing Hidden Patterns in Deep Neural Network Feature Space Continuum via Manifold Learning (Nature Communications, 2023)
  ☆28Updated last year
• shizuo-kaji / CubicalRipser_3dim
  Persistent homology calculation for 1D (scalar time series), 2D (image), and 3D, 4D (voxel) arrays
  ☆55Updated 2 months ago
• nstucki / Betti-matching
  ☆57Updated 6 months ago
• masadcv / torchmaxflow
  PyTorch-based implementation of Max-flow/Min-cut (graphcut) for 2D/3D data
  ☆15Updated 3 years ago
• raminnakhli / AMIGO
  This is the pytorch\DGL implementation of the AMIGO paper.
  ☆10Updated last year
• franciszchen / PTree-Net
  The source code of 'Diagnose Like A Pathologist: Weakly-Supervised Pathologist-Tree Network for Slide-Level Immunohistochemical Scoring' …
  ☆24Updated 4 years ago
• weih527 / Pixel-Embedded-Affinity
  Learning to Model Pixel-Embedded Affinity for Homogeneous Instance Segmentation
  ☆12Updated 2 years ago
• neel-dey / AnyStar
  [WACV 2024] AnyStar: Domain randomized universal star-convex 3D instance segmentation
  ☆16Updated last month
• antonfrancois / Demeter_metamorphosis
  Open library for LDDMM and Metamorphosis in PyTorch
  ☆23Updated 2 weeks ago
• RUB-Bioinf / VesselExpress
  🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes
  ☆52Updated last year
• Limingxing00 / MitoEM2021-Challenge
  Accepted by ISBI 2022 (Oral)
  ☆39Updated 3 years ago
• zudi-lin / pytorch_connectomics
  PyTorch Connectomics: segmentation toolbox for EM connectomics
  ☆179Updated last week
• AdelehBitarafan / Vol2Flow
  ☆11Updated last year
• rantalainenGroup / ACROBAT
  ☆17Updated 3 years ago
• FZJ-INM1-BDA / celldetection
  Scalable Instance Segmentation using PyTorch & PyTorch Lightning.
  ☆145Updated 6 months ago
• NYUMedML / headCT_foundation
  Foundation 3D ViT model for volumetric head CT
  ☆45Updated last month
• AshStuff / dissm
  ☆26Updated 3 years ago
• TissueImageAnalytics / CoNIC
  CoNIC Challenge
  ☆69Updated last year
• m1balcerak / PhysRegTumor
  [NeurIPS 2024] Official repository for "Physics-Regularized Multi-Modal Image Assimilation for Brain Tumor Localization"
  ☆19Updated 9 months ago