A fast and memory-efficient method for haplotype assembly from long gapless reads.
☆10Jun 11, 2018Updated 8 years ago
Alternatives and similar repositories for HapCol
Users that are interested in HapCol are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Adaptive haplotype assembly for efficiently leveraging high coverage in long reads☆13Sep 4, 2018Updated 8 years ago
- program for haplotype phasing from sequence reads and related tools☆25Nov 29, 2018Updated 7 years ago
- ECML16: GaKCo: a Fast Gapped k-mer string Kernel using Counting☆14Aug 28, 2019Updated 7 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Sep 28, 2026Updated 3 weeks ago
- Tools to convert to and from vcf format☆14Jun 21, 2017Updated 9 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆13Jan 23, 2020Updated 6 years ago
- Divine: Prioritizing Genes for Rare Mendelian Disease in Whole Exome Sequencing Data☆13Apr 18, 2019Updated 7 years ago
- URMAP ultra-fast read mapper☆38Jun 15, 2020Updated 6 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated this week
- eXtasy: Variant Prioritization by Genomic Data Fusion☆13Feb 19, 2014Updated 12 years ago
- HiCtrans is a pipeline to call translocations from Hi-C data☆17Sep 27, 2021Updated 5 years ago
- The borg algorithm portfolio platform.☆14Apr 13, 2013Updated 13 years ago
- Useful FILe and stream Operations☆45Dec 21, 2015Updated 10 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Feb 2, 2021Updated 5 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Apr 23, 2019Updated 7 years ago
- Ruby Queue☆13Sep 30, 2015Updated 11 years ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- ☆11Dec 9, 2022Updated 3 years ago
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- ☆35Feb 20, 2020Updated 6 years ago
- Small general purpose library for C and Python with focus on bioinformatics.☆31Sep 15, 2022Updated 4 years ago
- A fast and efficient short read mapper☆13Nov 7, 2021Updated 4 years ago
- A varitation graph tool☆10Dec 23, 2019Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- indel haplotype visualization on the command line from BAM files☆12Mar 12, 2014Updated 12 years ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Mar 12, 2018Updated 8 years ago
- Pan gGnome Viewer☆10Sep 24, 2026Updated 3 weeks ago
- Compare different genome alignment tools using a wide range of genomes with different complexities.☆14Dec 3, 2022Updated 3 years ago
- Header-only, gzread-like reader for gzip, bz2, and xz.☆11Aug 8, 2018Updated 8 years ago
- RelocaTE2☆19Oct 6, 2023Updated 3 years ago
- A fork of the project Excavator2 from sourceforge.☆10Jun 29, 2017Updated 9 years ago
- Scripts for analyses and figures for SNP STR Imputation manuscript☆14Jul 24, 2018Updated 8 years ago
- Color Genomics Structural Variant Simulator☆11Sep 6, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A Pedantic FASTA Parser and Tool Set☆14Apr 22, 2020Updated 6 years ago
- A graph aligner☆31Sep 17, 2024Updated 2 years ago
- Sniphles is a read-based phasing approach for phased variant calling of structural variants.☆12Oct 14, 2020Updated 6 years ago
- ☆32May 7, 2026Updated 5 months ago
- Converts snpeff annotations into MAF☆11Aug 23, 2024Updated 2 years ago
- Genotyping of segregating mobile elements insertions☆19Jul 29, 2021Updated 5 years ago
- Custom tools to 'facilitate' BioNano Genomics data analysis☆34Sep 29, 2026Updated 2 weeks ago