tsy19900929 / snpeffToMafLinks
Converts snpeff annotations into MAF
☆11Updated 9 months ago
Alternatives and similar repositories for snpeffToMaf
Users that are interested in snpeffToMaf are comparing it to the libraries listed below
Sorting:
- ☆53Updated 2 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆45Updated 2 months ago
- Burden testing against public controls☆50Updated last year
- Tools for processing and analyzing structural variants.☆33Updated 9 years ago
- CN-Learn☆29Updated 5 years ago
- ENCODE long read RNA-seq pipeline☆48Updated 2 years ago
- ☆39Updated last year
- QDNAseq package for Bioconductor☆50Updated 10 months ago
- This is the official development repository for BaseVar, which call variants for large-scale ultra low-pass (<1.0x) WGS data, especially …☆28Updated 3 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆47Updated 5 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆69Updated 9 months ago
- ☆41Updated last year
- Benchmarking of CNV calling tools☆18Updated 6 years ago
- tools to find circRNAs in RNA-seq data☆43Updated 7 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆23Updated 2 years ago
- Structural variant merging tool☆50Updated 9 months ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆19Updated 4 years ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago
- ☆43Updated 2 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆50Updated 3 years ago
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆62Updated last year
- ☆25Updated 5 years ago
- Allele-specific alignment sorting☆56Updated 2 years ago
- Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…☆28Updated last year
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- Tumor Mutational Burden☆58Updated 9 months ago
- ☆23Updated last year
- Long-read Isoform Quantification and Analysis☆39Updated 2 months ago
- Tools for extracting read counts and gc and mappability statistics in preparation for running HMMCopy.☆40Updated 3 years ago