tsy19900929 / snpeffToMafLinks
Converts snpeff annotations into MAF
☆11Updated last year
Alternatives and similar repositories for snpeffToMaf
Users that are interested in snpeffToMaf are comparing it to the libraries listed below
Sorting:
- ☆54Updated 2 years ago
 - SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆51Updated 3 weeks ago
 - Allele-specific alignment sorting☆59Updated 2 years ago
 - Helper scripts for biological data processing from Sentieon☆64Updated 2 weeks ago
 - Benchmarking of CNV calling tools☆18Updated 6 years ago
 - ClassifyCNV: a tool for clinical annotation of copy-number variants☆68Updated 2 years ago
 - Updated and optimized fork of BSMAP☆23Updated 4 years ago
 - Tools for processing and analyzing structural variants.☆33Updated 10 years ago
 - Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
 - ENCODE long read RNA-seq pipeline☆51Updated 2 years ago
 - WisecondorX — An evolved WISECONDOR☆105Updated 2 months ago
 - Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆73Updated last year
 - toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆64Updated last year
 - ☆46Updated 2 years ago
 - SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
 - IsoSeq3 - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆18Updated 7 years ago
 - BamDeal: a comprehensive toolkit for bam manipulation☆54Updated 2 years ago
 - ☆43Updated last year
 - ☆16Updated 4 years ago
 - A standalone end-to-end data analysis pipeline for Duplex Sequencing☆20Updated 2 years ago
 - SMN1 copy-number and sequence variant analysis from next generation sequencing data☆23Updated 2 years ago
 - This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆55Updated 5 years ago
 - CN-Learn☆30Updated 5 years ago
 - A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆66Updated last year
 - Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆117Updated 3 months ago
 - Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium…☆82Updated 2 years ago
 - A copy number caller for SMN1 and SMN2 to enable SMA diagnosis and carrier screening with WGS☆49Updated 2 years ago
 - ⛏ HLA predictions from NGS shotgun data☆55Updated 4 months ago
 - Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆69Updated last year
 - Microsatellite instability (MSI) detection for cfDNA samples.☆19Updated 4 years ago