Alternatives and similar repositories for proteomics-data-analysis-tutorial

Users that are interested in proteomics-data-analysis-tutorial are comparing it to the libraries listed below

• bartongroup / Proteus
  R package for analysing proteomics data
  ☆50Updated 2 years ago
• lgatto / RforProteomics
  Using R and Bioconductor packages for the analysis and comprehension of proteomics data.
  ☆99Updated 5 months ago
• jeffsocal / tidyproteomics
  An S3 data object and framework for common quantitative proteomic analyses
  ☆47Updated last month
• MonashBioinformaticsPlatform / LFQ-Analyst
  The repo for LFQ-Analyst
  ☆30Updated last year
• Proteomicslab57357 / UniprotR
  Retrieving Information of Proteins from Uniprot
  ☆72Updated last year
• saezlab / cosmosR
  COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…
  ☆64Updated last month
• tidymass / tidymass
  tidymass
  ☆59Updated 3 months ago
• ftwkoopmans / msdap
  MS-DAP: downstream analysis pipeline for quantitative proteomics
  ☆40Updated 10 months ago
• fgcz / prolfqua
  Differential Expression Analysis tool box R lang package for omics data
  ☆47Updated last month
• wangshisheng / NAguideR
  NAguideR: performing and prioritizing missing value imputations for consistent bottom-up proteomic analyses
  ☆51Updated 5 months ago
• NBISweden / workshop_omics_integration
  Workshop in omics integration and systems biology
  ☆85Updated last year
• pnnl / leapR
  ☆18Updated last month
• const-ae / proDA
  Protein Differential Abundance for Label-Free Mass Spectrometry https://const-ae.github.io/proDA/
  ☆21Updated 2 years ago
• arnesmits / DEP
  DEP package
  ☆30Updated 3 years ago
• Vitek-Lab / MSstatsShiny
  R-Shiny GUI integrated with the MSstats package family
  ☆19Updated last week
• cox-labs / PerseusR
  R package for easy interop between Perseus and R
  ☆15Updated 3 years ago
• Vitek-Lab / MSstats
  R package - MSstats
  ☆89Updated this week
• broadinstitute / protigy
  Proteomics Toolset for Integrative Data Analysis
  ☆26Updated 3 months ago
• DavisLaboratory / msImpute
  Methods for label-free mass spectrometry proteomics
  ☆15Updated 9 months ago
• rformassspectrometry / QFeatures
  Quantitative features for mass spectrometry data
  ☆28Updated last week
• uc-bd2k / GREIN
  GREIN : GEO RNA-seq Experiments Interactive Navigator
  ☆50Updated 6 years ago
• broadinstitute / PANOPLY
  Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…
  ☆37Updated last month
• tidyomics / tidyomics
  Easily install and load packages from the tidyomics ecosystem
  ☆74Updated 2 months ago
• hbctraining / main
  ☆57Updated this week
• ComputationalProteomics / NormalyzerDE
  Tools for normalization, evaluation of outliers, technical biases and batch effects and differential expression analysis.
  ☆26Updated last week
• cmap / cmapR
  Tools for manipulating annotated data matrices
  ☆92Updated 4 years ago
• AlexsLemonade / training-modules
  A collection of modules that are combined into 1-5 day workshops on computational topics for the childhood cancer research community.
  ☆71Updated last month
• reactome / ReactomeGSA
  R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis
  ☆30Updated last year
• crazyhottommy / papers_with_data_to_mine
  published papers with a lot of data
  ☆74Updated 9 months ago
• bzhanglab / OmicsEV
  A tool for large scale omics datasets evaluation
  ☆23Updated 2 years ago