bioinformatics-core-shared-training / ngs-in-bioc
A course on Analysing Next Generation (/High Throughput etc..) Sequencing data using Bioconductor
☆41Updated 8 years ago
Alternatives and similar repositories for ngs-in-bioc:
Users that are interested in ngs-in-bioc are comparing it to the libraries listed below
- http://bioinformatics-core-shared-training.github.io/cruk-bioinf-sschool☆34Updated 9 years ago
- Glimma R package☆50Updated 6 months ago
- Summer school course materials collection☆25Updated 6 years ago
- R package for genomic feature analysis and visualization☆75Updated 4 years ago
- R package for bcbio RNA-seq analysis.☆60Updated 5 months ago
- Devel repository for minfi☆60Updated 10 months ago
- An R client for broads firehose pipeline, providing TCGA data sets☆60Updated 5 years ago
- A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays☆30Updated last year
- Bioinformatics analysis scripts, workflows, general code examples☆53Updated 4 years ago
- DESeq2 or edgeR☆22Updated 8 years ago
- Code for biostar tutorials - mostly R and Perl☆50Updated 7 months ago
- Differential Count Data Analysis Toolbox☆61Updated last year
- ☆34Updated 8 years ago
- Companion repo for ExAC paper, 2015☆33Updated 8 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆86Updated this week
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 3 years ago
- Student website repo for 2015/2016 Canadian Bioinformatics Workshops☆34Updated last year
- An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.☆64Updated 7 years ago
- RNA-Sequencing data differential expression analysis pipeline. Performs: genome coverage (via bedtools and HTSeq), generates Circos code …☆55Updated 12 years ago
- Tutorial to reproduce the analysis of Peixoto et al. (2015)☆9Updated 9 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆57Updated 4 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆35Updated 6 years ago
- RNA-seq workflow: exploratory analysis and differential expression☆75Updated last year
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated last year
- Tutorial for AMSI BioInfoSummer 2018☆29Updated 6 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago
- Reactome Pathway Analysis☆40Updated 4 months ago
- Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.☆69Updated 3 years ago
- create, manage, and upload track hubs for use in the UCSC genome browser☆53Updated 10 months ago