AlexsLemonade / refinebio

Related projects ⓘ

Alternatives and complementary repositories for refinebio

• johandahlberg / awesome-10x-genomics
  List of tools and resources related to the 10x Genomics GEMCode/Chromium system
  ☆84Updated 5 years ago
• ewels / clusterflow
  A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.
  ☆97Updated last year
• Bioconductor / GenomicDataCommons
  Provide R access to the NCI Genomic Data Commons portal.
  ☆84Updated 2 weeks ago
• linnarsson-lab / loompy
  Python implementation of the Loom file format - http://loompy.org
  ☆140Updated 2 months ago
• maximilianh / cellBrowser
  main repo: https://github.com/ucscGenomeBrowser/cellBrowser/ - Python pipeline and Javascript scatter plot library for single-cell datase…
  ☆105Updated last year
• thelovelab / tximport
  Transcript quantification import for modular pipelines
  ☆136Updated 7 months ago
• broadinstitute / gnomad_methods
  Hail helper functions for the gnomAD project and Translational Genomics Group
  ☆89Updated last week
• EGA-archive / ega-download-client
  A Python-based EGA download client
  ☆94Updated last month
• arq5x / cyvcf
  A fast Python library for VCF files leveraging Cython for speed.
  ☆52Updated 6 years ago
• HumanCellAtlas / metadata-schema
  This repo is for the metadata schemas associated with the HCA
  ☆65Updated this week
• CGATOxford / cgat
  Do not use - please refer to our newest code: https://github.com/cgat-developers/cgat-apps
  ☆124Updated 6 years ago
• nsalomonis / altanalyze
  AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-…
  ☆99Updated 2 years ago
• ga4gh / vrs-python
  GA4GH Variation Representation Python Implementation
  ☆51Updated this week
• broadinstitute / mutect
  MuTect -- Accurate and sensitive cancer mutation detection
  ☆94Updated last year
• konradjk / loftee
  ☆174Updated last year
• deweylab / CellO
  CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology
  ☆64Updated last year
• nunofonseca / irap
  integrated RNA-seq Analysis Pipeline
  ☆82Updated 5 years ago
• stevetsa / awesome-microbes
  List of computational resources for analyzing microbial sequencing data.
  ☆66Updated last year
• broadinstitute / single_cell_portal_core
  Rails/Docker application for the Broad Institute's single cell RNA-seq data portal
  ☆63Updated this week
• daler / metaseq
  Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data
  ☆87Updated 4 years ago
• ncbi / dbsnp
  dbSNP
  ☆126Updated 4 months ago
• 4dn-dcic / tibanna
  Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integr…
  ☆70Updated 3 months ago
• konradjk / exac_browser
  Browser for ExAC consortium data
  ☆106Updated 2 years ago
• vals / umis
  Tools for processing UMI RNA-tag data
  ☆129Updated last year
• Hoohm / dropSeqPipe
  A SingleCell RNASeq pre-processing snakemake workflow
  ☆147Updated last year
• macarthur-lab / clinvar
  This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file…
  ☆122Updated 4 years ago
• catavallejos / BASiCS
  BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/pa…
  ☆84Updated 5 months ago
• broadinstitute / gtex-viz
  GTEx Visualizations
  ☆64Updated 3 years ago
• aertslab / SCope
  Fast visualization tool for large-scale and high dimensional single-cell data
  ☆68Updated last year
• r-bioinformatics / edgePy
  A Python implementation of edgeR for differential expression analysis
  ☆96Updated 5 years ago