Alternatives and similar repositories for refinebio

Users that are interested in refinebio are comparing it to the libraries listed below

• johandahlberg / awesome-10x-genomics
  List of tools and resources related to the 10x Genomics GEMCode/Chromium system
  ☆85Updated 6 years ago
• greenelab / multi-plier
  An unsupervised transfer learning approach for rare disease transcriptomics
  ☆45Updated 5 years ago
• biothings / mygene.info
  MyGene.info: A BioThings API for gene annotations
  ☆128Updated last month
• kundajelab / ENCODE_downloader
  Downloader for ENCODE
  ☆32Updated 5 years ago
• Bioconductor / GenomicDataCommons
  Provide R access to the NCI Genomic Data Commons portal.
  ☆89Updated 5 months ago
• nunofonseca / irap
  integrated RNA-seq Analysis Pipeline
  ☆83Updated 6 years ago
• churchmanlab / genewalk
  GeneWalk identifies relevant gene functions for a biological context using network representation learning
  ☆132Updated last year
• maximilianh / crisporPaper
  Code for the CRISPOR article, all data and code to create figures and analysis
  ☆45Updated 9 years ago
• sebriois / biomart
  Python biomart API
  ☆68Updated 2 years ago
• openvax / varcode
  Library for manipulating genomic variants and predicting their effects
  ☆85Updated last year
• ewels / clusterflow
  A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.
  ☆98Updated 2 years ago
• MaayanLab / biojupies
  Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.
  ☆119Updated 4 months ago
• YuLab-SMU / DOSE
  Disease Ontology Semantic and Enrichment analysis
  ☆121Updated 3 weeks ago
• ueser / FIDDLE
  Flexible Integration of Data with Deep LEarning
  ☆51Updated 2 years ago
• ISCB-Academy / Elements-of-Style-Reproducible-Workflow-Creation-Maintenance-Tutorial
  ☆19Updated 3 years ago
• ncbi / dbsnp
  dbSNP
  ☆141Updated last year
• r-bioinformatics / edgePy
  A Python implementation of edgeR for differential expression analysis
  ☆103Updated 6 years ago
• biothings / myvariant.py
  Python client for MyVariant.info web services.
  ☆23Updated 9 months ago
• chanzuckerberg / ExpressionMatrix2
  Software for exploration of gene expression data from single-cell RNA sequencing.
  ☆28Updated 6 years ago
• brentp / cruzdb
  python access to UCSC genomes database
  ☆136Updated 5 years ago
• pkerpedjiev / gene-citation-counts
  ☆32Updated 5 years ago
• jrderuiter / pybiomart
  A simple pythonic interface to biomart.
  ☆56Updated 5 years ago
• vanessajurtz / lasagne4bio
  ☆107Updated 7 years ago
• deweylab / MetaSRA-pipeline
  MetaSRA: normalized sample-specific metadata for the Sequence Read Archive
  ☆45Updated 2 weeks ago
• googlegenomics / pipelines-api-examples
  Examples for the Google Genomics Pipelines API.
  ☆50Updated 7 years ago
• openvax / topiary
  Predict mutated T-cell epitopes from sequencing data
  ☆30Updated 8 months ago
• 4dn-dcic / tibanna
  Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integr…
  ☆71Updated this week
• broadinstitute / single_cell_portal
  Tutorials, workflows, and convenience scripts for Single Cell Portal
  ☆50Updated last year
• thelovelab / tximport
  Transcript quantification import for modular pipelines
  ☆141Updated 2 weeks ago
• kundajelab / coda
  Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data
  ☆33Updated 8 years ago