Alternatives and similar repositories for refinebio

Users that are interested in refinebio are comparing it to the libraries listed below

• sebriois / biomart
  Python biomart API
  ☆65Updated last year
• johandahlberg / awesome-10x-genomics
  List of tools and resources related to the 10x Genomics GEMCode/Chromium system
  ☆84Updated 6 years ago
• kundajelab / ENCODE_downloader
  Downloader for ENCODE
  ☆32Updated 4 years ago
• Hoohm / dropSeqPipe
  A SingleCell RNASeq pre-processing snakemake workflow
  ☆149Updated 2 years ago
• Bioconductor / GenomicDataCommons
  Provide R access to the NCI Genomic Data Commons portal.
  ☆89Updated 3 weeks ago
• CGATOxford / cgat
  Do not use - please refer to our newest code: https://github.com/cgat-developers/cgat-apps
  ☆124Updated 6 years ago
• broadinstitute / single_cell_portal
  Tutorials, workflows, and convenience scripts for Single Cell Portal
  ☆50Updated last year
• r-bioinformatics / edgePy
  A Python implementation of edgeR for differential expression analysis
  ☆103Updated 6 years ago
• chanzuckerberg / ExpressionMatrix2
  Software for exploration of gene expression data from single-cell RNA sequencing.
  ☆28Updated 5 years ago
• openvax / varcode
  Library for manipulating genomic variants and predicting their effects
  ☆84Updated 11 months ago
• jrderuiter / pybiomart
  A simple pythonic interface to biomart.
  ☆55Updated 5 years ago
• thelovelab / tximport
  Transcript quantification import for modular pipelines
  ☆138Updated last year
• nunofonseca / irap
  integrated RNA-seq Analysis Pipeline
  ☆84Updated 6 years ago
• nsalomonis / altanalyze
  AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-…
  ☆103Updated 2 years ago
• AlexsLemonade / OpenPBTA-analysis
  The analysis repository for the Open Pediatric Brain Tumor Atlas Project
  ☆103Updated last year
• hbc / knowledgebase
  recipes that save time
  ☆138Updated last month
• arq5x / cyvcf
  A fast Python library for VCF files leveraging Cython for speed.
  ☆52Updated 7 years ago
• pachterlab / scRNA-Seq-TCC-prep
  Preprocessing of single-cell RNA-Seq (deprecated)
  ☆62Updated 5 years ago
• lgautier / fastq-and-furious
  Efficient handling of FASTQ files from Python
  ☆51Updated last week
• deweylab / CellO
  CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology
  ☆65Updated last year
• hms-dbmi / scde
  R package for analyzing single-cell RNA-seq data
  ☆175Updated last year
• linnarsson-lab / loompy
  Python implementation of the Loom file format - http://loompy.org
  ☆144Updated 5 months ago
• MaayanLab / biojupies
  Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.
  ☆115Updated 6 months ago
• deweylab / MetaSRA-pipeline
  MetaSRA: normalized sample-specific metadata for the Sequence Read Archive
  ☆43Updated this week
• churchmanlab / genewalk
  GeneWalk identifies relevant gene functions for a biological context using network representation learning
  ☆131Updated 10 months ago
• gogetdata / ggd-recipes
  conda recipes for genomic data
  ☆85Updated 3 years ago
• francescojm / CRISPRcleanR
  Unsupervised correction of gene independent cell responses to CRISPR-cas9
  ☆50Updated 2 years ago
• aertslab / SCope
  Fast visualization tool for large-scale and high dimensional single-cell data
  ☆73Updated 2 years ago
• broadinstitute / gtex-viz
  GTEx Visualizations
  ☆64Updated 4 years ago
• HumanCellAtlas / data-store
  Design specs and prototypes for the HCA Data Storage System (DSS, "blue box")
  ☆41Updated 2 months ago