Aharoni-Lab / Miniscope-LFOVLinks
Large field-of-view miniature microscope for rats and larger animals.
☆17Updated 2 years ago
Alternatives and similar repositories for Miniscope-LFOV
Users that are interested in Miniscope-LFOV are comparing it to the libraries listed below
Sorting:
- CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…☆106Updated 9 months ago
- Multi-probe trajectory planning in an intuitive 3D environment☆56Updated this week
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆76Updated 5 months ago
- Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)☆38Updated last month
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆175Updated last month
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- Registration of cells across sessions.☆75Updated last year
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆77Updated 9 months ago
- ☆11Updated 3 weeks ago
- Tools to register histological section images and cell count locations to mouse brain atlas☆28Updated 3 years ago
- The Freely Moving Animal (FMA) Toolbox is a Matlab toolbox. Its purpose is to help analyze electrophysiological and behavioral data recor…☆12Updated 4 years ago
- WIP: Python port of Kilosort2☆50Updated 2 years ago
- NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…☆131Updated 2 months ago
- ☆52Updated last year
- Python code for interacting with the Open Ephys GUI☆40Updated last week
- pyqt5 dependent applications for IBL sessions☆29Updated 3 weeks ago
- Plugins for Phy2☆16Updated 4 months ago
- Code for neural and behavioral data analysis from the Brain Computation and Behavior Lab, aka AyA Lab, at Cornell University.☆18Updated this week
- Calcium imaging inter-session alignment☆11Updated last month
- A gui for browsing joint calcium imaging + behavioral data.☆54Updated 7 months ago
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated 11 months ago
- Histology processing☆69Updated last week
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆151Updated 3 weeks ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆26Updated last year
- Package for automatic post-processing and merging of multiple spike-sorting analyses.☆26Updated last month
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆95Updated 10 months ago
- miniscope analysis pipeline with interactive visualizations☆95Updated last year
- Ephys toolbox to match single units (electrophysiology) either within the same day (over splits) or across two days☆66Updated this week
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆69Updated 2 weeks ago
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆62Updated 2 months ago