Aharoni-Lab / Miniscope-LFOVLinks
Large field-of-view miniature microscope for rats and larger animals.
☆17Updated 2 years ago
Alternatives and similar repositories for Miniscope-LFOV
Users that are interested in Miniscope-LFOV are comparing it to the libraries listed below
Sorting:
- Match suite2p ROIs between imaging sessions☆28Updated 6 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆99Updated last year
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆83Updated last year
- miniscope analysis pipeline with interactive visualizations☆98Updated last year
- Multi-probe trajectory planning in an intuitive 3D environment☆56Updated last month
- Registration of cells across sessions.☆76Updated last year
- Tools to register histological section images and cell count locations to mouse brain atlas☆28Updated 3 years ago
- Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)☆40Updated 2 months ago
- CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…☆111Updated 4 months ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆80Updated 9 months ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆26Updated 2 years ago
- Package for automatic post-processing and merging of multiple spike-sorting analyses.☆28Updated last week
- ☆13Updated last week
- Histology processing☆72Updated last month
- ☆52Updated last year
- Repository for BehaviorDEPOT pipeline app files and source code☆41Updated last month
- spike extraction from calcium signals (Deneux et al., 2016)☆34Updated 5 years ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆57Updated 2 years ago
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆185Updated 2 weeks ago
- The Freely Moving Animal (FMA) Toolbox is a Matlab toolbox. Its purpose is to help analyze electrophysiological and behavioral data recor…☆15Updated 4 years ago
- Calcium imaging inter-session alignment☆16Updated last month
- Python package to handle probe layout, geometry and wiring to device.☆78Updated 2 weeks ago
- Pre-processing pipeline for widefield data☆12Updated 5 years ago
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆64Updated last year
- NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…☆141Updated this week
- pyqt5 dependent applications for IBL sessions☆32Updated 2 weeks ago
- Utilities for managing Neuropixel datasets and Kilosort results☆48Updated 8 months ago
- Fiber photometry analysis☆23Updated 2 weeks ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆70Updated last week
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated 2 years ago