This is the webpage of the ESGEM-AMR Working Group
☆16Mar 31, 2026Updated 2 weeks ago
Alternatives and similar repositories for ESGEM-AMR
Users that are interested in ESGEM-AMR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The Mobilome Ontology describes bacterial mobile genetic elements, their mechanisms, and associated epidemiology.☆10Oct 2, 2025Updated 6 months ago
- Interpretative standards for AMR genotypes☆29Mar 24, 2026Updated 3 weeks ago
- A Python package to update the MLST database for the mlst tool.☆20Mar 31, 2026Updated 2 weeks ago
- The Antibiotic Resistance Ontology (ARO) organizes the information describing the ability of a microorganism to withstand the effects of …☆21Oct 2, 2025Updated 6 months ago
- Organism-specific interpretation of AMR genotypes☆16Mar 17, 2026Updated 3 weeks ago
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A public repository for collective curation of antimicrobial resistance (AMR) genes and mutations. Submit, discuss, and resolve AMR curat…☆63Sep 23, 2025Updated 6 months ago
- A toolkit to validate and consolidate antimicrobial resistance gene databases☆20Apr 21, 2023Updated 2 years ago
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆359Mar 29, 2026Updated 2 weeks ago
- The AMRgen package provides tools for interpreting antimicrobial resistance (AMR) genes, integrating genomic data with phenotypic antimic…☆15Mar 31, 2026Updated 2 weeks ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆14Jun 12, 2024Updated last year
- Mycobacterial pipeline☆11Sep 11, 2025Updated 7 months ago
- StxTyper uses a standardized algorithm to accurately type both known and unknown Shiga toxin operons from assembled genomic sequence.☆16Dec 9, 2025Updated 4 months ago
- Phylogenetic, Distance and Other Calculations on VCF and Fasta Files☆28Feb 2, 2026Updated 2 months ago
- My personal website☆26Mar 31, 2026Updated 2 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆10Mar 29, 2025Updated last year
- Catalog of genomic indexes freely available from public clouds☆70Mar 11, 2026Updated last month
- SPANDx - Comparative genomics for next-generation haploid sequence data☆22Feb 27, 2026Updated last month
- ARG normalization by mapping to the ARO ontology.☆64Jul 30, 2025Updated 8 months ago
- A pipeline for comprehensive genomic analyses of Mycobacterium tuberculosis with a focus on clinical decision making as well as research☆19Jan 8, 2026Updated 3 months ago
- ☆38Dec 6, 2023Updated 2 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆86Jan 24, 2026Updated 2 months ago
- A repository for collecting GPU basecalling stats☆89Feb 10, 2026Updated 2 months ago
- Infer transmission clusters from SNP and timing data☆16May 20, 2020Updated 5 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A MALDI Mass Spectrometry Bioinformatics Platform☆31Dec 19, 2024Updated last year
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆173Apr 16, 2025Updated last year
- Parser for Ghost Koala☆10Aug 23, 2018Updated 7 years ago
- A snakemake workflow for WGS-based tuberculosis transmission analysis☆20Dec 3, 2024Updated last year
- R package for computing alpha and beta contributional diversity metrics☆11May 5, 2023Updated 2 years ago
- Efficient and fast querying and parsing of GTDB's data☆29Aug 21, 2025Updated 7 months ago
- Profiler for metagenomics based on NGLess☆13Feb 22, 2024Updated 2 years ago
- 🧬 Chromatogram File Utils, a package that integrates trace visualization, mutation calling and quality control for Sanger sequencing dat…☆23May 22, 2025Updated 10 months ago
- ☆16Apr 1, 2026Updated 2 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A R package for multi-dimensional data visualization☆11Jul 15, 2025Updated 9 months ago
- Helper Functions for Academic Writing and Organization☆11Dec 26, 2024Updated last year
- Barrio typeface recover the freshness of the street little shops.☆15Mar 13, 2019Updated 7 years ago
- A comprehensive and intuitive encapsulated OO class system for analyzing bacterial pangenomes in R.☆28Feb 14, 2023Updated 3 years ago
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆12May 19, 2021Updated 4 years ago
- Fast and Easy Data Cleaning (in R)☆34Mar 11, 2025Updated last year
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆216Aug 27, 2025Updated 7 months ago