Alternatives and similar repositories for genio:

Users that are interested in genio are comparing it to the libraries listed below

• andywdahl / rgwas
  Learn and validate subtypes from multiple traits
  ☆20Updated 3 years ago
• variani / lme4qtl
  Mixed models @lme4 + custom covariances + parameter constraints
  ☆50Updated 4 years ago
• stephenslab / effective-computing
  Effective Computing—Resources for Computational Biologists
  ☆26Updated 4 years ago
• StoreyLab / popkin
  R package to estimate kinship and FST from SNP data
  ☆19Updated 3 months ago
• csoneson / ExploreModelMatrix
  Explore design matrices interactively with R/Shiny
  ☆37Updated last month
• myles-lewis / locuszoomr
  A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.
  ☆33Updated this week
• Bioconductor / GenomicRanges
  Representation and manipulation of genomic intervals
  ☆45Updated 2 months ago
• kaustubhad / fastman
  An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.
  ☆36Updated last month
• Gregor-Mendel-Institute / mlmm
  An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations
  ☆16Updated 6 years ago
• gladkia / igvShiny
  An htmlwidget version of igv, for RStudio and Shiny apps
  ☆37Updated 2 months ago
• Stahl-Lab-MSSM / coloc2
  Upgrade to coloc
  ☆13Updated 6 years ago
• hanchenphd / GMMAT
  Generalized linear Mixed Model Association Tests
  ☆38Updated last year
• psoerensen / qgg
  Statistical tools for Quantitative Genetic Analyses
  ☆35Updated 3 weeks ago
• andreyshabalin / ramwas
  RaMWAS: Fast Methylome-Wide Association Study Pipeline for Enrichment Platforms
  ☆10Updated 3 years ago
• stemangiola / bioc_2020_tidytranscriptomics
  Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap
  ☆26Updated 4 years ago
• ilarsf / gwasTools
  Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)
  ☆30Updated 11 months ago
• gladkia / igvR
  An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser
  ☆43Updated 2 months ago
• nignatiadis / IHW
  Independent Hypothesis Weighting
  ☆15Updated last year
• hansenlab / minfi
  Devel repository for minfi
  ☆60Updated 9 months ago
• Nealelab / UKBB_ldsc
  Sample code for ldsc analyses in UKBB
  ☆30Updated last year
• QuantGen / BEDMatrix
  A matrix-like wrapper around PLINK .bed files
  ☆18Updated 4 months ago
• igordot / msigdbr
  MSigDB gene sets for multiple organisms in a tidy data format
  ☆70Updated last week
• Shians / Glimma
  Glimma R package
  ☆50Updated 4 months ago
• tobyjohnson / gtx
  Genetics ToolboX R package
  ☆31Updated 4 years ago
• andrewparkermorgan / argyle
  An R package for import, QC and analysis of Illumina Infinium genotyping arrays
  ☆33Updated 6 years ago
• stephenslab / mashr
  An R package for multivariate adaptive shrinkage.
  ☆91Updated 2 months ago
• yaowuliu / ACAT
  ☆31Updated 3 years ago
• jmacdon / Bioc2020Anno
  ☆11Updated 4 years ago
• astheeggeggs / UKBB_ldsc_r2
  genetic correlation between phenotypes in the UK biobank
  ☆12Updated 11 months ago
• kevinblighe / CorLevelPlot
  Visualise correlation results and test significancies of these
  ☆21Updated 4 years ago