Code for major analyses in "Spatially resolved multi-omics of human metabolic dysfunction-associated steatotic liver disease" paper by Ziyu Li
☆15Nov 25, 2025Updated 8 months ago
Alternatives and similar repositories for Spatial_multiomics_analysis_MASLD
Users that are interested in Spatial_multiomics_analysis_MASLD are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- scripts associated with NAFLD-NASH project☆31May 23, 2024Updated 2 years ago
- Codes used in LISTA project.☆15Apr 17, 2024Updated 2 years ago
- R code for metaanalysis of single cell liver data☆12Feb 1, 2021Updated 5 years ago
- ☆17Dec 18, 2023Updated 2 years ago
- Multimodal Spatial-Omics Reveal Co-Evolution of Alveolar Progenitors and Proinflammatory Niches in Progression of Lung Precursor Lesions☆16Sep 18, 2025Updated 10 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆12Jun 11, 2023Updated 3 years ago
- Cross-modal Identification of Tertiary Lymphoid Structures☆31Jun 19, 2024Updated 2 years ago
- Total copy number inference from single-cell RNA and ATAC sequing with cell clustering☆12Oct 31, 2024Updated last year
- Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"☆23Dec 1, 2024Updated last year
- scType goes spatial: ScType enables fast and accurate cell type identification from spatial transcriptomics data☆12Jul 11, 2024Updated 2 years ago
- ☆61Aug 6, 2025Updated last year
- Free-access R books for beginners. Welcome to Fork it. Commercial use is forbidden!☆14Sep 16, 2018Updated 7 years ago
- ☆17Mar 10, 2026Updated 5 months ago
- ☆28Sep 20, 2023Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- From QC to summary statistics☆17Jun 27, 2020Updated 6 years ago
- Perform differential expression analysis on multi-sample single cell datasets using linear mixed models☆34Jul 2, 2026Updated last month
- Reproducing the experiments of the DestVI paper☆24Feb 9, 2022Updated 4 years ago
- ☆16Oct 1, 2024Updated last year
- [知识管理]A simple yet powerful blog system for reading and organizing txt/Markdown/html files, based on PHP. 订阅/关注请点顶部的 Watch,收藏/点赞请点顶部的Sta…☆18May 16, 2026Updated 2 months ago
- python API to the CoGAPS NMF package☆22Jul 24, 2026Updated 2 weeks ago
- ☆12Apr 25, 2026Updated 3 months ago
- CellRank 2's reproducibility repository.☆16Sep 4, 2024Updated last year
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆118Jun 9, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆12May 14, 2025Updated last year
- ☆17Apr 15, 2025Updated last year
- Code associated with the data analysis for Miyoshi & Morabito 2024☆31Jul 8, 2025Updated last year
- ☆34Jun 12, 2024Updated 2 years ago
- Analysis pipelines for QTL discovery and GWAS signals interpretation☆13Sep 3, 2024Updated last year
- single cell analysis of treatment naive and treated human PDAC☆25May 27, 2022Updated 4 years ago
- scType rewritten in python☆25Nov 7, 2024Updated last year
- Correlation-based approach for identification of endocrine interactions☆13Jan 18, 2022Updated 4 years ago
- ☆38Jun 4, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A Snakemake pipeline for Quality Control of Whole Genome Sequencing data☆14Jan 18, 2022Updated 4 years ago
- lncHOME (lncRNA Homology Explorer), a computational pipeline that identifies a unique coPARSE-lncRNA class with conserved genomic locatio…☆12Nov 2, 2023Updated 2 years ago
- Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.☆20Dec 5, 2024Updated last year
- material related to the genetech courses☆10Sep 11, 2023Updated 2 years ago
- CORNAS is a fast method for reliable DEG calls in unreplicated conditions.☆13Jul 14, 2019Updated 7 years ago
- ☆13Jan 26, 2025Updated last year
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Aug 24, 2022Updated 3 years ago