AlexandrovLab / SigProfilerMatrixGeneratorLinks
SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations only to parts for the genome (e.g., exome or a custom BED file). The tool seamlessly integrates with other SigProfiler tools.
☆111Updated 3 weeks ago
Alternatives and similar repositories for SigProfilerMatrixGenerator
Users that are interested in SigProfilerMatrixGenerator are comparing it to the libraries listed below
Sorting:
- Assignment of known mutational signatures to individual samples and individual somatic mutations☆61Updated 3 weeks ago
- ☆76Updated 4 months ago
- Battenberg R package for subclonal copynumber estimation☆91Updated last month
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 4 years ago
- Microsatellite instability (MSI) detection for tumor only data.☆108Updated last year
- SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the n…☆163Updated 3 weeks ago
- ☆117Updated last year
- ☆116Updated last year
- A tool for the calculation of RNA-editing index for RNA seq data☆43Updated last year
- ☆71Updated 2 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆77Updated 2 months ago
- Probabilistic model for inferring clonal population structure from deep NGS sequencing.☆107Updated 5 years ago
- deconstructSigs☆143Updated 2 years ago
- An R package to time somatic mutations☆62Updated 4 years ago
- SigProfilerPlotting provides a standard tool for displaying all types of mutational signatures as well as all types of mutational pattern…☆50Updated 5 months ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated 9 months ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆74Updated 2 years ago
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆147Updated 4 years ago
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆77Updated last year
- Somatic copy variant caller (CNV) for next generation sequencing☆74Updated 11 months ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆82Updated 7 months ago
- Software program for checking sample matching for NGS data☆134Updated last year
- ☆88Updated last month
- R package containing useful functions for mutational signature analysis☆83Updated last week
- mgatk: mitochondrial genome analysis toolkit☆108Updated 7 months ago
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆68Updated 2 months ago
- ☆95Updated 3 weeks ago
- An R package for inferring the subclonal architecture of tumors☆121Updated last year
- STAR based ENCODE Long RNA-Seq processing pipeline☆95Updated 4 years ago