Alternatives and similar repositories for OligoFormer

Users that are interested in OligoFormer are comparing it to the libraries listed below

• KarchinLab / bigmhc
  BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
  ☆60Updated last month
• ntranoslab / esm-variants
  ☆86Updated 2 years ago
• phbradley / TCRdock
  python tools for TCR:peptide-MHC modeling and analysis
  ☆87Updated last year
• pgmikhael / protgps
  ☆97Updated 7 months ago
• a96123155 / UTR-LM
  ☆92Updated last year
• IdoSpringer / ERGO-II
  ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction
  ☆34Updated 3 years ago
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆46Updated 2 years ago
• bm2-lab / PanPep
  ☆52Updated 2 years ago
• Abalign / Abalign
  A visualization software for antibody multi sequence alignment
  ☆22Updated last year
• mnielLab / NetTCR-2.0
  NetTCR-2.0. Sequence-based prediction of peptide-TCR binding
  ☆35Updated 3 years ago
• frankligy / DeepImmuno
  Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity
  ☆74Updated 2 years ago
• wukevin / tcr-bert
  Large language modeling applied to T-cell receptor (TCR) sequences.
  ☆58Updated 3 years ago
• antigenomics / tcren-ms
  📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential
  ☆24Updated 4 months ago
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆102Updated 11 months ago
• TencentAILabHealthcare / DeepAIR
  ☆38Updated 2 years ago
• sambitmishra0628 / siRNA_activity_prediction
  Predicting siRNA activity with machine learning
  ☆24Updated 6 years ago
• schumacherlab / STAPLER
  STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…
  ☆28Updated 9 months ago
• GfellerLab / MixMHCpred
  HLA-I ligand predictor
  ☆43Updated 4 months ago
• kuixu / PrismNet
  Predicting dynamic cellular protein-RNA interactions using deep learning and in vivo RNA structure
  ☆66Updated last year
• MIDIfactory / AlphaFastPPi
  Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening
  ☆39Updated last year
• zzz2010 / 5UTR_Optimizer
  Code for 5UTR project
  ☆26Updated 2 years ago
• steineggerlab / colabfold-protocol
  ColabFold protocol
  ☆56Updated last year
• lingxusb / Riboformer
  ☆25Updated 7 months ago
• kuixu / alphafold
  Install alphafold on the local machine, get out of docker.
  ☆103Updated 4 years ago
• nf-core / proteinfold
  Protein 3D structure prediction pipeline
  ☆95Updated last week
• TRON-Bioinformatics / TCLP
  an online cancer cell line catalogue integrating HLA type, predicted neo-epitopes, virus and gene expression
  ☆12Updated last year
• VariantEffect / mavedb-api
  MaveDB API
  ☆16Updated this week
• hsalis / SalisLabCode
  Models, design algorithms, and other software related to Salis lab publications
  ☆36Updated last year
• FPPGroup / CodonBERT
  CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.
  ☆41Updated last year
• viragbioinfo / IMMREP_2022_TCRSpecificity
  ☆22Updated 3 years ago