lulab / OligoFormerLinks
☆32Updated 4 months ago
Alternatives and similar repositories for OligoFormer
Users that are interested in OligoFormer are comparing it to the libraries listed below
Sorting:
- ☆50Updated last year
- ☆93Updated 3 months ago
- ☆90Updated 11 months ago
- python tools for TCR:peptide-MHC modeling and analysis☆82Updated last year
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆40Updated last year
- ☆78Updated 2 years ago
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆56Updated last year
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆72Updated 2 years ago
- ☆20Updated 2 years ago
- Predicting siRNA activity with machine learning☆24Updated 6 years ago
- Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening☆39Updated 11 months ago
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆119Updated last year
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆28Updated 4 months ago
- Code repository of "Deep generative design of RNA family sequences"☆35Updated last year
- Geometric deep learning of protein–DNA binding specificity☆75Updated 6 months ago
- HLA-II ligand predictor.☆44Updated 2 years ago
- ColabFold protocol☆53Updated 11 months ago
- Predicting immunogenic peptide recognized by TCR through ensemble deep learning☆16Updated last year
- ☆38Updated 2 years ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆33Updated 3 years ago
- HLA-I ligand predictor☆43Updated 9 months ago
- A visualization software for antibody multi sequence alignment☆20Updated last year
- Feature map and function annotation of Proteins☆33Updated last year
- Struct2GO:protein function prediction based on Graph pooling algorithm and AlphaFold2 structure information☆27Updated last year
- Large language modeling applied to T-cell receptor (TCR) sequences.☆56Updated 3 years ago
- VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.☆42Updated last month
- Automatic oligonucleotide design for PCR-based gene synthesis☆47Updated 6 years ago
- Evolutionary velocity with protein language models☆94Updated last year
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Updated last year
- iFeatureOmega is a comprehensive platform for generating, analyzing and visualizing more than 170 representations for biological sequence…☆34Updated 2 years ago