lulab / OligoFormer
☆24Updated last month
Alternatives and similar repositories for OligoFormer:
Users that are interested in OligoFormer are comparing it to the libraries listed below
- 📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential☆18Updated last month
- ☆82Updated 6 months ago
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆52Updated last year
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆33Updated 3 years ago
- Functional Embedding of Gene Signatures☆43Updated last year
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆26Updated last week
- HLA-II ligand predictor.☆43Updated 2 years ago
- A visualization software for antibody multi sequence alignment☆18Updated 10 months ago
- Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"☆13Updated 4 years ago
- ☆9Updated 2 years ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆32Updated 3 years ago
- Generic TCR-epitope recognition prediction using CNN approach on both known and novel epitopes☆16Updated last year
- ☆73Updated last year
- python tools for TCR:peptide-MHC modeling and analysis☆75Updated last year
- Predicting siRNA activity with machine learning☆23Updated 5 years ago
- ☆25Updated 4 months ago
- ☆34Updated 2 years ago
- ☆19Updated 2 years ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆68Updated 2 years ago
- Struct2GO:protein function prediction based on Graph pooling algorithm and AlphaFold2 structure information☆26Updated last year
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆80Updated 2 years ago
- Predicting immunogenic peptide recognized by TCR through ensemble deep learning☆15Updated last year
- Code for 5UTR project☆24Updated last year
- ☆21Updated 2 years ago
- ☆49Updated last year
- TLimmuno2: predicting MHC class II antigen immunogenicity through transfer learning☆9Updated last year
- Computational Optimization of DNA Activity (CODA)☆56Updated last month
- Feature map and function annotation of Proteins☆33Updated 10 months ago
- Comprehensive Python client for the Uniprot REST API☆49Updated 8 months ago
- ☆27Updated 3 months ago