lulab / OligoFormer
☆21Updated last month
Alternatives and similar repositories for OligoFormer:
Users that are interested in OligoFormer are comparing it to the libraries listed below
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆33Updated 2 years ago
- ☆72Updated last year
- ☆19Updated 2 years ago
- HLA-II ligand predictor.☆40Updated last year
- Predicting immunogenic peptide recognized by TCR through ensemble deep learning☆13Updated 9 months ago
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆50Updated 9 months ago
- python tools for TCR:peptide-MHC modeling and analysis☆69Updated 10 months ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆29Updated 2 years ago
- 📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential☆16Updated last month
- ☆73Updated 4 months ago
- ☆46Updated last year
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆25Updated 9 months ago
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆77Updated 2 years ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆65Updated last year
- A visualization software for antibody multi sequence alignment☆18Updated 8 months ago
- Generic TCR-epitope recognition prediction using CNN approach on both known and novel epitopes☆15Updated last year
- Struct2GO:protein function prediction based on Graph pooling algorithm and AlphaFold2 structure information☆26Updated 11 months ago
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆34Updated 5 months ago
- ☆33Updated last year
- ☆15Updated 3 years ago
- Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"☆13Updated 3 years ago
- Code repository of "Deep generative design of RNA family sequences"☆31Updated 7 months ago
- Functional Embedding of Gene Signatures☆39Updated 11 months ago
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆23Updated 2 years ago
- ☆11Updated last year
- ☆37Updated 4 months ago
- PRedictor of IMmunogenic Epitopes☆17Updated 9 months ago
- Code for "T Cell Receptor Specificity Prediction with Bimodal Attention Networks" (https://doi.org/10.1093/bioinformatics/btab294, ISMB 2…☆29Updated last year
- ☆23Updated 2 months ago
- Official implement of paper "Multi-purpose RNA Language Modeling with Motif-aware Pre-training and Type-guided Fine-tuning"☆40Updated 4 months ago