Benchmark datasets for WGS analysis
☆39Aug 4, 2019Updated 6 years ago
Alternatives and similar repositories for datasets
Users that are interested in datasets are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Sketch-based surveillance platform☆14Dec 17, 2024Updated last year
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated last year
- Utility to alias and dealias pango lineages☆23Dec 18, 2023Updated 2 years ago
- Static website for the PH4AGE alliance☆13Oct 27, 2023Updated 2 years ago
- all methods related to Enterobase☆44Sep 4, 2024Updated last year
- ☆84Sep 13, 2023Updated 2 years ago
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆14Aug 26, 2024Updated last year
- Gotree is a set of command line tools and an API to manipulate phylogenetic trees. It is implemented in Go language.☆144Mar 13, 2026Updated last week
- In silico serotyping, finetyping and Bexsero antigen sequence typing of Neisseria meningitidis☆15Feb 19, 2026Updated last month
- Bioinformatics Pipeline and Visualization resources☆65Aug 30, 2024Updated last year
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of pathogens of public health con…☆61Updated this week
- Standard database for the TBProfiler tool☆30Mar 12, 2026Updated last week
- Summarise nucleotide counts at a set of positions in a BAM file to search for mixtures☆13Apr 5, 2022Updated 3 years ago
- software to identify primers that can distinguish genomes☆20Jan 23, 2026Updated 2 months ago
- Scan contig files against PubMLST typing schemes☆269Jan 2, 2026Updated 2 months ago
- An SRA tool that takes as input local fastq file from a clinical infection sample, identifies and removes any significant human read, and…☆53Jul 24, 2025Updated 8 months ago
- A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.☆35Dec 2, 2024Updated last year
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆39Feb 20, 2026Updated last month
- QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run☆12Dec 2, 2024Updated last year
- Genome size estimation from long read overlaps☆81Mar 9, 2026Updated 2 weeks ago
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆63Updated this week
- ASMNGS20 - 2020 Conference Details☆15Jun 10, 2022Updated 3 years ago
- StxTyper uses a standardized algorithm to accurately type both known and unknown Shiga toxin operons from assembled genomic sequence.☆17Dec 9, 2025Updated 3 months ago
- Quasitools is a collection of tools for analysing viral quasispecies data.☆27Nov 25, 2021Updated 4 years ago
- For all your cluster needs☆17Feb 3, 2023Updated 3 years ago
- ♥ Efficient Estimation of Evolutionary Distances☆47Feb 15, 2026Updated last month
- A Python package to update the MLST database for the mlst tool.☆18Mar 18, 2026Updated last week
- UPHL's Reference Free Pipeline☆27Updated this week
- tools for assessing the accuracy of genome assemblies☆35Apr 16, 2024Updated last year
- Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.☆10Jan 6, 2023Updated 3 years ago
- A message queue for genomic surveillance☆20Oct 14, 2021Updated 4 years ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆153Dec 31, 2025Updated 2 months ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Feb 27, 2026Updated 3 weeks ago
- Library of sketching functions used by PopPUNK☆31Mar 31, 2025Updated 11 months ago
- GrapeTree is a fully interactive, tree visualization program, which supports facile manipulations of both tree layout and metadata. Click…☆87Dec 15, 2024Updated last year
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆35Sep 20, 2022Updated 3 years ago
- Histosketching Using Little Kmers☆57May 25, 2023Updated 2 years ago
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, es…☆42Aug 5, 2024Updated last year
- ☆21Feb 12, 2026Updated last month