WGS-standards-and-analysis / datasetsLinks
Benchmark datasets for WGS analysis
☆39Updated 6 years ago
Alternatives and similar repositories for datasets
Users that are interested in datasets are comparing it to the libraries listed below
Sorting:
- de novo virus assembler of Illumina paired reads☆57Updated 4 years ago
- SNP Pipeline is a pipeline for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organism…☆63Updated 2 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆54Updated 3 months ago
- Flexible circular visualization of genome-associated data with BioPerl and SVG.☆47Updated 6 years ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- A resistome profiler for Graphing Resistance Out Of meTagenomes☆65Updated 5 years ago
- De novo Extraction of Strains from MetAgeNomes☆71Updated 5 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆76Updated 9 years ago
- tools for assessing the accuracy of genome assemblies☆34Updated last year
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆62Updated 5 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Small collection of tools for performing quality control on coronavirus sequencing data and genomes☆48Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- Protein Alignment and Detection Interface☆60Updated last year
- Scripts and programs for the Holt Lab's MinION desktop☆32Updated 4 years ago
- ☆53Updated 4 years ago
- CRyPTIC data processing pipelines☆34Updated last year
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- 🔗Genome assembly scaffolder using minimizer graphs☆84Updated last year
- The Zika bioinformatics pipeline☆36Updated 5 years ago
- Split Kmer Analysis☆65Updated 3 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆45Updated 5 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54Updated 2 years ago
- A method of assessing sequence complexity based on kmer frequencies☆32Updated 7 years ago
- Visualize whole genome alignments as linear maps☆73Updated 2 months ago
- k-mer counting software☆39Updated 3 years ago
- Rapid and scalable homolog identification for bacterial genomes☆33Updated 6 years ago