WGS-standards-and-analysis / datasetsLinks
Benchmark datasets for WGS analysis
☆39Updated 6 years ago
Alternatives and similar repositories for datasets
Users that are interested in datasets are comparing it to the libraries listed below
Sorting:
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- de novo virus assembler of Illumina paired reads☆57Updated 4 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆76Updated 9 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- Protein Alignment and Detection Interface☆60Updated last year
- A resistome profiler for Graphing Resistance Out Of meTagenomes☆65Updated 5 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- Visualize whole genome alignments as linear maps☆73Updated 2 months ago
- Split Kmer Analysis☆65Updated 3 years ago
- Flexible circular visualization of genome-associated data with BioPerl and SVG.☆47Updated 6 years ago
- De novo Extraction of Strains from MetAgeNomes☆71Updated 5 years ago
- SNP Pipeline is a pipeline for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organism…☆63Updated 2 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆45Updated 5 years ago
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- GrapeTree is a fully interactive, tree visualization program, which supports facile manipulations of both tree layout and metadata. Click…☆83Updated 10 months ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 4 months ago
- ☆53Updated 4 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- tools for assessing the accuracy of genome assemblies☆34Updated last year
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆31Updated 4 years ago
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆57Updated 2 weeks ago
- ☆31Updated last year
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.☆50Updated 3 years ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆69Updated this week
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago